TBC1D9B (TBC1 domain family member 9B) - Rat Genome Database

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Gene: TBC1D9B (TBC1 domain family member 9B) Pan paniscus
Analyze
Symbol: TBC1D9B
Name: TBC1 domain family member 9B
RGD ID: 12003217
Description: ENCODES a protein that exhibits calcium ion binding (inferred); GTPase activator activity (inferred); INVOLVED IN regulation of cilium assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24174,810,433 - 174,856,831 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15172,948,942 - 172,996,361 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05175,021,717 - 175,067,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15182,343,899 - 182,387,140 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5182,343,899 - 182,387,225 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TBC1D9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24174,810,433 - 174,856,831 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15172,948,942 - 172,996,361 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05175,021,717 - 175,067,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15182,343,899 - 182,387,140 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5182,343,899 - 182,387,225 (-)Ensemblpanpan1.1panPan2
TBC1D9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385179,862,071 - 179,907,897 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5179,862,066 - 179,907,897 (-)EnsemblGRCh38hg38GRCh38
GRCh375179,289,071 - 179,334,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365179,221,677 - 179,267,464 (-)NCBINCBI36Build 36hg18NCBI36
Celera5174,914,219 - 174,960,020 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5174,013,821 - 174,059,392 (-)NCBIHuRef
CHM1_15178,721,413 - 178,767,291 (-)NCBICHM1_1
T2T-CHM13v2.05180,417,215 - 180,462,876 (-)NCBIT2T-CHM13v2.0
Tbc1d9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,021,891 - 50,063,612 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,022,223 - 50,063,612 (+)EnsemblGRCm39 Ensembl
GRCm381150,131,059 - 50,172,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,131,396 - 50,172,785 (+)EnsemblGRCm38mm10GRCm38
MGSCv371149,944,862 - 49,986,287 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,974,783 - 50,016,208 (+)NCBIMGSCv36mm8
Celera1154,691,528 - 54,733,141 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.28NCBI
Tbc1d9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81034,961,012 - 34,998,227 (+)NCBIGRCr8
mRatBN7.21034,459,930 - 34,497,146 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1034,459,953 - 34,497,145 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1039,135,411 - 39,172,515 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0107,674,660 - 7,711,764 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01034,129,092 - 34,166,197 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01035,637,103 - 35,677,335 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1035,637,133 - 35,677,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01035,397,640 - 35,436,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41035,686,754 - 35,721,323 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11035,506,285 - 35,721,082 (+)NCBI
Celera1033,809,345 - 33,847,569 (+)NCBICelera
Cytogenetic Map10q22NCBI
Tbc1d9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955408690,829 - 724,384 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955408690,827 - 724,987 (+)NCBIChiLan1.0ChiLan1.0
TBC1D9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1111,793,525 - 1,831,773 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl111,781,641 - 1,829,895 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha111,913,867 - 1,955,864 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0111,764,229 - 1,806,246 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl111,763,755 - 1,806,236 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1111,735,910 - 1,777,880 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0111,815,203 - 1,857,163 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0112,055,312 - 2,097,338 (+)NCBIUU_Cfam_GSD_1.0
Tbc1d9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213119,662,585 - 119,710,543 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936739872,356 - 918,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936739872,362 - 919,570 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl278,691,807 - 78,725,534 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1278,675,867 - 78,726,391 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2280,241,932 - 80,292,784 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12381,595,246 - 81,635,828 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2381,594,392 - 81,635,808 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607512,974,969 - 13,016,062 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473342,719,934 - 42,752,489 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473342,719,641 - 42,752,559 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000056268   ⟹   ENSPPAP00000033393
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5182,343,899 - 182,387,141 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056270   ⟹   ENSPPAP00000033395
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5182,343,899 - 182,387,141 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056277   ⟹   ENSPPAP00000033402
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5182,345,275 - 182,387,225 (-)Ensembl
RefSeq Acc Id: XM_034961213   ⟹   XP_034817104
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24174,810,433 - 174,856,831 (-)NCBI
NHGRI_mPanPan15172,949,953 - 172,996,347 (-)NCBI
Mhudiblu_PPA_v05175,021,717 - 175,067,970 (-)NCBI
RefSeq Acc Id: XM_034961214   ⟹   XP_034817105
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24174,810,433 - 174,856,822 (-)NCBI
NHGRI_mPanPan15172,948,942 - 172,996,361 (-)NCBI
Mhudiblu_PPA_v05175,021,717 - 175,067,970 (-)NCBI
RefSeq Acc Id: XM_055112904   ⟹   XP_054968879
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24174,810,433 - 174,856,811 (-)NCBI
NHGRI_mPanPan15172,948,942 - 172,996,347 (-)NCBI
RefSeq Acc Id: XM_063604339   ⟹   XP_063460409
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24174,810,433 - 174,856,811 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034817104 (Get FASTA)   NCBI Sequence Viewer  
  XP_034817105 (Get FASTA)   NCBI Sequence Viewer  
  XP_054968879 (Get FASTA)   NCBI Sequence Viewer  
  XP_063460409 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033393.1
  ENSPPAP00000033395.1
  ENSPPAP00000033402.1
Reference Protein Sequences
RefSeq Acc Id: XP_034817105   ⟸   XM_034961214
- Peptide Label: isoform X4
- UniProtKB: A0A2R9BY37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817104   ⟸   XM_034961213
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BUP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000033393   ⟸   ENSPPAT00000056268
RefSeq Acc Id: ENSPPAP00000033402   ⟸   ENSPPAT00000056277
RefSeq Acc Id: ENSPPAP00000033395   ⟸   ENSPPAT00000056270
RefSeq Acc Id: XP_054968879   ⟸   XM_055112904
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460409   ⟸   XM_063604339
- Peptide Label: isoform X1
Protein Domains
EF-hand   Rab-GAP TBC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039526 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056268.1 UniProtKB/TrEMBL
  ENSPPAT00000056270.1 UniProtKB/TrEMBL
  ENSPPAT00000056277.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 1 UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  TCB1D9/TCB1D9B_PH-GRAM1 UniProtKB/TrEMBL
  TCB1D9/TCB1D9B_PH-GRAM2 UniProtKB/TrEMBL
NCBI Gene TBC1D9B ENTREZGENE
PANTHER PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC UniProtKB/TrEMBL
  TBC1 DOMAIN FAMILY MEMBER 9B UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  TBC_RABGAP UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  TBC UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF47923 UniProtKB/TrEMBL
UniProt A0A2R9BUP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BUQ6_PANPA UniProtKB/TrEMBL
  A0A2R9BY37 ENTREZGENE, UniProtKB/TrEMBL