LOC100987154 (testis-specific H1 histone) - Rat Genome Database

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Gene: LOC100987154 (testis-specific H1 histone) Pan paniscus
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Symbol: LOC100987154
Name: testis-specific H1 histone
RGD ID: 12002791
Description: INVOLVED IN sperm chromatin condensation (ortholog); spermatid nucleus elongation (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11241,280,957 - 41,282,281 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1241,281,177 - 41,281,944 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01240,402,590 - 40,406,005 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (ISO)
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
LOC100987154
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11241,280,957 - 41,282,281 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1241,281,177 - 41,281,944 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01240,402,590 - 40,406,005 (-)NCBIMhudiblu_PPA_v0panPan3
H1-7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1248,328,980 - 48,330,279 (+)EnsemblGRCh38hg38GRCh38
GRCh381248,328,980 - 48,330,279 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371248,722,763 - 48,724,062 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,009,030 - 47,010,329 (+)NCBINCBI36hg18NCBI36
Celera1247,520,294 - 47,521,593 (+)NCBI
Cytogenetic Map12q13.11NCBI
HuRef1245,755,928 - 45,757,227 (+)NCBIHuRef
CHM1_11248,688,136 - 48,689,435 (+)NCBICHM1_1
H1f7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,153,863 - 98,155,188 (-)NCBIGRCm39mm39
GRCm39 Ensembl1598,153,867 - 98,155,174 (-)Ensembl
GRCm381598,255,982 - 98,257,307 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,255,986 - 98,257,293 (-)EnsemblGRCm38mm10GRCm38
MGSCv371598,086,413 - 98,087,738 (-)NCBIGRCm37mm9NCBIm37
MGSCv361598,084,016 - 98,085,313 (-)NCBImm8
Celera15100,387,598 - 100,388,923 (-)NCBICelera
Cytogenetic Map15F1NCBI
H1f7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27129,408,521 - 129,409,888 (-)NCBI
Rnor_6.0 Ensembl7139,871,479 - 139,872,900 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07139,871,491 - 139,872,858 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07139,015,809 - 139,017,176 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,995,394 - 136,996,761 (-)NCBIRGSC3.4rn4RGSC3.4
Celera7125,899,914 - 125,901,281 (-)NCBICelera
Cytogenetic Map7q36NCBI
LOC106146871
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555007,329,361 - 7,329,842 (-)NCBIChiLan1.0ChiLan1.0
H1-7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,389,797 - 6,396,021 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,389,908 - 6,391,174 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2739,881,927 - 39,888,151 (+)NCBI
ROS_Cfam_1.0276,457,201 - 6,463,429 (-)NCBI
UMICH_Zoey_3.1276,393,405 - 6,399,629 (-)NCBI
UNSW_CanFamBas_1.0276,429,260 - 6,435,485 (-)NCBI
UU_Cfam_GSD_1.02740,200,972 - 40,207,197 (+)NCBI
LOC101974551
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,964,013 - 66,964,967 (-)NCBI
SpeTri2.0NW_0049365126,199,894 - 6,200,786 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100516553
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl578,699,128 - 78,700,333 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1578,699,291 - 78,700,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2581,891,927 - 81,892,942 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103238227
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11144,557,985 - 44,559,218 (+)NCBI
Vero_WHO_p1.0NW_023666037201,608,799 - 201,610,031 (-)NCBI
LOC101702847
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248163,931,613 - 3,932,549 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003825794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000014150   ⟹   ENSPPAP00000003054
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1241,281,177 - 41,281,944 (-)Ensembl
RefSeq Acc Id: XM_003825794   ⟹   XP_003825842
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11241,280,957 - 41,282,281 (-)NCBI
Mhudiblu_PPA_v01240,402,590 - 40,406,005 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003825842 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003825842   ⟸   XM_003825794
- Sequence:
RefSeq Acc Id: ENSPPAP00000003054   ⟸   ENSPPAT00000014150


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000012971 Ensembl, ENTREZGENE
NCBI Gene LOC100987154 ENTREZGENE