LOC100984200 (zinc finger and SCAN domain-containing protein 2) - Rat Genome Database

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Gene: LOC100984200 (zinc finger and SCAN domain-containing protein 2) Pan paniscus
Analyze
Symbol: LOC100984200
Name: zinc finger and SCAN domain-containing protein 2
RGD ID: 12002164
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC100984200; zinc finger protein 775; zinc finger protein LOC728743 homolog; ZNF775
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26186,826,573 - 186,858,271 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1738,858,410 - 38,868,535 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,020,408 - 142,028,510 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,156,936 - 154,181,358 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100984200
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26186,826,573 - 186,858,271 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1738,858,410 - 38,868,535 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,020,408 - 142,028,510 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,156,936 - 154,181,358 (+)NCBIpanpan1.1PanPan1.1panPan2
LOC728743
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387150,400,702 - 150,412,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7150,400,702 - 150,412,470 (+)NCBIGRCh38hg38GRCh38
GRCh377150,097,790 - 150,109,558 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q36.1NCBI
HuRef7143,918,729 - 143,925,445 (+)NCBIHuRef
CHM1_17150,111,228 - 150,117,947 (+)NCBICHM1_1
T2T-CHM13v2.07151,579,025 - 151,590,794 (+)NCBIT2T-CHM13v2.0
AI854703
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39648,603,973 - 48,610,625 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl648,603,698 - 48,610,623 (+)EnsemblGRCm39 Ensembl
GRCm38648,628,167 - 48,633,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl648,626,764 - 48,633,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv37648,578,166 - 48,583,687 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36648,557,521 - 48,563,274 (+)NCBIMGSCv36mm8
Celera649,139,180 - 49,144,701 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map623.61NCBI
RGD1559747
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,906,990 - 78,916,716 (+)NCBIGRCr8
mRatBN7.2477,579,877 - 77,585,816 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl477,579,079 - 77,586,066 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,787,349 - 82,793,281 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0478,562,856 - 78,568,792 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0477,003,131 - 77,009,063 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0478,263,126 - 78,269,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04142,926,810 - 142,932,748 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,718,082 - 76,724,021 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera472,517,189 - 72,523,127 (+)NCBICelera
Cytogenetic Map4q24NCBI
LOC110257542
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11855,960,637 - 55,967,427 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034965227   ⟹   XP_034821118
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,852,879 - 186,858,271 (+)NCBI
NHGRI_mPanPan1738,862,907 - 38,868,535 (+)NCBI
Mhudiblu_PPA_v07142,021,372 - 142,024,413 (+)NCBI
RefSeq Acc Id: XM_034965228   ⟹   XP_034821119
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,852,627 - 186,858,271 (+)NCBI
NHGRI_mPanPan1738,862,891 - 38,868,535 (+)NCBI
Mhudiblu_PPA_v07142,021,356 - 142,024,413 (+)NCBI
RefSeq Acc Id: XM_034965229   ⟹   XP_034821120
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,852,498 - 186,858,271 (+)NCBI
NHGRI_mPanPan1738,858,410 - 38,868,535 (+)NCBI
Mhudiblu_PPA_v07142,020,408 - 142,024,413 (+)NCBI
RefSeq Acc Id: XM_034965230   ⟹   XP_034821121
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,852,662 - 186,858,271 (+)NCBI
NHGRI_mPanPan1738,862,920 - 38,868,535 (+)NCBI
Mhudiblu_PPA_v07142,021,372 - 142,024,413 (+)NCBI
RefSeq Acc Id: XM_034965231   ⟹   XP_034821122
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,853,237 - 186,858,271 (+)NCBI
NHGRI_mPanPan1738,863,498 - 38,868,535 (+)NCBI
Mhudiblu_PPA_v07142,021,962 - 142,024,413 (+)NCBI
RefSeq Acc Id: XM_055115525   ⟹   XP_054971500
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,853,151 - 186,858,271 (+)NCBI
NHGRI_mPanPan1738,863,498 - 38,868,535 (+)NCBI
RefSeq Acc Id: XM_055115526   ⟹   XP_054971501
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,853,108 - 186,858,271 (+)NCBI
NHGRI_mPanPan1738,863,285 - 38,868,535 (+)NCBI
RefSeq Acc Id: XM_057302785   ⟹   XP_057158768
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,853,151 - 186,858,271 (+)NCBI
NHGRI_mPanPan1738,863,498 - 38,868,535 (+)NCBI
RefSeq Acc Id: XM_063606414   ⟹   XP_063462484
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26186,826,573 - 186,858,271 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034821120   ⟸   XM_034965229
- UniProtKB: A0A2R9B345 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034821119   ⟸   XM_034965228
- UniProtKB: A0A2R9B345 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034821118   ⟸   XM_034965227
- UniProtKB: A0A2R9B345 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034821121   ⟸   XM_034965230
- UniProtKB: A0A2R9B345 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034821122   ⟸   XM_034965231
- UniProtKB: A0A2R9B345 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971501   ⟸   XM_055115526
RefSeq Acc Id: XP_054971500   ⟸   XM_055115525
RefSeq Acc Id: XP_057158768   ⟸   XM_057302785
RefSeq Acc Id: XP_063462484   ⟸   XM_063606414
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034883 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046233.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF775 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 5B UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0A2R9B345 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100984200  zinc finger and SCAN domain-containing protein 2  ZNF775  zinc finger protein 775  Symbol and/or name change 5135510 APPROVED