TUFM (Tu translation elongation factor, mitochondrial) - Rat Genome Database

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Gene: TUFM (Tu translation elongation factor, mitochondrial) Pan paniscus
Analyze
Symbol: TUFM
Name: Tu translation elongation factor, mitochondrial
RGD ID: 11999788
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); translation elongation factor activity (inferred); INVOLVED IN response to ethanol (ortholog); ASSOCIATED WITH Brody myopathy (ortholog); chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation factor Tu, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21831,899,627 - 31,917,744 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11636,731,726 - 36,735,282 (+)NCBINHGRI_mPanPan1
PanPan1.11629,229,905 - 29,233,508 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1629,227,852 - 29,233,513 (-)Ensemblpanpan1.1panPan2


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TUFM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21831,899,627 - 31,917,744 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11636,731,726 - 36,735,282 (+)NCBINHGRI_mPanPan1
PanPan1.11629,229,905 - 29,233,508 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1629,227,852 - 29,233,513 (-)Ensemblpanpan1.1panPan2
TUFM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,842,411 - 28,846,348 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,842,411 - 28,846,348 (-)EnsemblGRCh38hg38GRCh38
GRCh371628,853,732 - 28,857,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,761,613 - 28,765,144 (-)NCBINCBI36Build 36hg18NCBI36
Build 341628,761,613 - 28,765,144NCBI
Celera1627,808,340 - 27,812,337 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1626,721,293 - 26,725,288 (-)NCBIHuRef
CHM1_11629,865,576 - 29,869,573 (-)NCBICHM1_1
T2T-CHM13v2.01629,122,980 - 29,140,210 (-)NCBIT2T-CHM13v2.0
Tufm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,086,445 - 126,089,903 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,086,533 - 126,089,903 (+)EnsemblGRCm39 Ensembl
GRCm387126,487,271 - 126,490,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,487,361 - 126,490,731 (+)EnsemblGRCm38mm10GRCm38
MGSCv377133,630,869 - 133,634,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,278,580 - 126,281,878 (+)NCBIMGSCv36mm8
Celera7126,339,931 - 126,343,307 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.08NCBI
Tufm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,504,373 - 190,507,980 (+)NCBIGRCr8
mRatBN7.21181,073,788 - 181,077,395 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,073,788 - 181,077,395 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,404,383 - 189,407,991 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,590,469 - 196,594,077 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,278,338 - 189,281,945 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,903,582 - 197,907,189 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,903,582 - 197,907,189 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,882,342 - 204,885,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,631,333 - 185,634,940 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,780,653 - 185,784,699 (+)NCBI
Celera1178,732,489 - 178,736,096 (+)NCBICelera
Cytogenetic Map1q36NCBI
Tufm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554936,619,205 - 6,623,780 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554936,619,205 - 6,623,780 (+)NCBIChiLan1.0ChiLan1.0
TUFM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,357,223 - 18,360,929 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,357,244 - 18,361,557 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,935,471 - 19,939,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,493,014 - 18,496,651 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,493,018 - 18,496,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,292,398 - 18,296,035 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,207,329 - 18,210,966 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,523,444 - 18,527,083 (-)NCBIUU_Cfam_GSD_1.0
Tufm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,761,676 - 123,765,829 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,859,552 - 11,865,747 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,859,558 - 11,863,689 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUFM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,521,128 - 18,524,959 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,521,119 - 18,524,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,706,416 - 18,709,827 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TUFM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,221,203 - 26,225,080 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,221,337 - 26,225,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660683,348,805 - 3,353,298 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tufm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,914,359 - 12,918,194 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,914,362 - 12,918,194 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000046871   ⟹   ENSPPAP00000024047
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1629,227,852 - 29,233,513 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046878   ⟹   ENSPPAP00000024053
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1629,232,108 - 29,233,380 (-)Ensembl
RefSeq Acc Id: XM_063597529   ⟹   XP_063453599
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21831,909,133 - 31,917,744 (+)NCBI
RefSeq Acc Id: XM_063597530   ⟹   XP_063453600
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21831,899,627 - 31,917,744 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063453599 (Get FASTA)   NCBI Sequence Viewer  
  XP_063453600 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024047.1
  ENSPPAP00000024053.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000024053   ⟸   ENSPPAT00000046878
RefSeq Acc Id: ENSPPAP00000024047   ⟸   ENSPPAT00000046871
RefSeq Acc Id: XP_063453600   ⟸   XM_063597530
- UniProtKB: A0A2R9B376 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063453599   ⟸   XM_063597529
- UniProtKB: A0A2R9B376 (UniProtKB/TrEMBL)
Protein Domains
tr-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035168 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046871.1 UniProtKB/TrEMBL
  ENSPPAT00000046878.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro EF-Tu_GTP-bd UniProtKB/TrEMBL
  EFTu-like_2 UniProtKB/TrEMBL
  EFTU_2 UniProtKB/TrEMBL
  G_TR_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  T_Tr_GTP-bd_dom UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_bac/org UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_C UniProtKB/TrEMBL
KEGG Report pps:100992686 UniProtKB/TrEMBL
NCBI Gene TUFM ENTREZGENE
PANTHER ELONGATION FACTOR TU, MITOCHONDRIAL UniProtKB/TrEMBL
  ELONGATION FACTOR TU-RELATED UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/TrEMBL
  GTP_EFTU_D3 UniProtKB/TrEMBL
PRINTS ELONGATNFCT UniProtKB/TrEMBL
PROSITE G_TR_1 UniProtKB/TrEMBL
  G_TR_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF50447 UniProtKB/TrEMBL
  SSF50465 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9B376 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B3B0_PANPA UniProtKB/TrEMBL