SLC43A2 (solute carrier family 43 member 2)

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Gene: SLC43A2 (solute carrier family 43 member 2) Pan paniscus

Analyze

Symbol:

SLC43A2

Name:

solute carrier family 43 member 2

RGD ID:

11998405

Description:

ENCODES a protein that exhibits L-amino acid transmembrane transporter activity (ortholog); INVOLVED IN L-amino acid transport (ortholog); negative regulation of amino acid transport (ortholog); negative regulation of leucine import (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

large neutral amino acids transporter small subunit 4

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	1,455,767 - 1,508,437 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	1,455,767 - 1,508,443 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	1,557,305 - 1,612,968 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

L-amino acid transport (ISO)

negative regulation of amino acid transport (ISO)

negative regulation of leucine import (ISO)

Cellular Component

plasma membrane (ISO)

Molecular Function

L-amino acid transmembrane transporter activity (ISO)

protein binding (ISO)

References

Genomics

Comparative Map Data

SLC43A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	1,455,767 - 1,508,437 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	1,455,767 - 1,508,443 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	1,557,305 - 1,612,968 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SLC43A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	1,569,267 - 1,628,886 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	17	1,569,268 - 1,628,886 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	1,569,254 - 1,630,014 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	1,477,678 - 1,532,130 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	1,424,446 - 1,478,880 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	1,424,445 - 1,478,880	NCBI
Celera	17	1,493,130 - 1,547,478 (-)	NCBI
Cytogenetic Map	17	p13.3	NCBI
HuRef	17	1,377,342 - 1,431,478 (-)	NCBI		HuRef
CHM1_1	17	1,481,308 - 1,540,959 (-)	NCBI		CHM1_1

Slc43a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	75,420,741 - 75,468,401 (+)	NCBI	GRCm39		mm39
GRCm38	11	75,529,915 - 75,577,575 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	75,531,694 - 75,577,575 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	75,345,210 - 75,388,543 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	75,347,903 - 75,391,236 (+)	NCBI			mm8
Celera	11	83,040,687 - 83,084,024 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI

Slc43a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	10	63,676,317 - 63,719,283 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	63,677,396 - 63,719,283 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	64,285,713 - 64,328,683 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	62,853,094 - 62,894,776 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	62,867,612 - 62,905,728 (+)	NCBI
Celera	10	59,404,785 - 59,446,467 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Slc43a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	1,550,289 - 1,595,942 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	1,550,289 - 1,597,213 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC43A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	9	45,736,508 - 45,776,270 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	9	45,731,379 - 45,777,277 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Slc43a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936538	7,712,564 - 7,758,069 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC43A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	47,791,911 - 47,838,946 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	47,791,911 - 47,839,127 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	49,676,753 - 49,724,924 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC43A2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	1,247,383 - 1,300,012 (-)	NCBI
ChlSab1.1 Ensembl	16	1,244,913 - 1,299,519 (-)	Ensembl

Slc43a2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	4,284,559 - 4,334,086 (-)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034941226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000031951 ⟹ ENSPPAP00000009310

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	1,455,767 - 1,508,443 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000031955 ⟹ ENSPPAP00000009314

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	1,456,966 - 1,508,443 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000031956 ⟹ ENSPPAP00000009315

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	1,456,966 - 1,508,437 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000031957 ⟹ ENSPPAP00000009316

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	1,456,966 - 1,485,331 (-)	Ensembl

RefSeq Acc Id:

XM_034941226 ⟹ XP_034797117

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	17	1,558,527 - 1,612,968 (-)	NCBI

RefSeq Acc Id:

XM_034941227 ⟹ XP_034797118

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	17	1,558,527 - 1,612,446 (-)	NCBI

RefSeq Acc Id:

XM_034941228 ⟹ XP_034797119

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	17	1,557,305 - 1,612,387 (-)	NCBI

RefSeq Acc Id:

XM_034941229 ⟹ XP_034797120

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	17	1,557,328 - 1,612,878 (-)	NCBI

RefSeq Acc Id:

XM_034941230 ⟹ XP_034797121

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	17	1,557,328 - 1,610,453 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_034797117	(Get FASTA)	NCBI Sequence Viewer
	XP_034797118	(Get FASTA)	NCBI Sequence Viewer
	XP_034797119	(Get FASTA)	NCBI Sequence Viewer
	XP_034797120	(Get FASTA)	NCBI Sequence Viewer
	XP_034797121	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_034797119 ⟸ XM_034941228
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_034797120 ⟸ XM_034941229
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_034797121 ⟸ XM_034941230
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_034797117 ⟸ XM_034941226
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_034797118 ⟸ XM_034941227
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSPPAP00000009316 ⟸ ENSPPAT00000031957

RefSeq Acc Id:

ENSPPAP00000009310 ⟸ ENSPPAT00000031951

RefSeq Acc Id:

ENSPPAP00000009315 ⟸ ENSPPAT00000031956

RefSeq Acc Id:

ENSPPAP00000009314 ⟸ ENSPPAT00000031955

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000027856	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000009310	UniProtKB/TrEMBL
	ENSPPAP00000009314	UniProtKB/TrEMBL
	ENSPPAP00000009315	UniProtKB/TrEMBL
	ENSPPAP00000009316	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000031951	UniProtKB/TrEMBL
	ENSPPAT00000031955	UniProtKB/TrEMBL
	ENSPPAT00000031956	UniProtKB/TrEMBL
	ENSPPAT00000031957	UniProtKB/TrEMBL
InterPro	LAT4	UniProtKB/TrEMBL
	MFS	UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/TrEMBL
NCBI Gene	SLC43A2	ENTREZGENE
PANTHER	PTHR20766:SF2	UniProtKB/TrEMBL
Pfam	MFS_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103473	UniProtKB/TrEMBL
UniProt	A0A2R8ZWF6_PANPA	UniProtKB/TrEMBL
	A0A2R8ZWG1_PANPA	UniProtKB/TrEMBL
	A0A2R8ZWG9_PANPA	UniProtKB/TrEMBL
	A0A2R9A229_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD