RBPJL (recombination signal binding protein for immunoglobulin kappa J region like) - Rat Genome Database

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Gene: RBPJL (recombination signal binding protein for immunoglobulin kappa J region like) Pan paniscus
Analyze
Symbol: RBPJL
Name: recombination signal binding protein for immunoglobulin kappa J region like
RGD ID: 11997364
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); genetic disease (ortholog); maturity-onset diabetes of the young type 1 (ortholog); FOUND IN nucleus (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: recombining binding protein suppressor of hairless-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,040,310 - 51,052,913 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,033,551 - 51,046,021 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02041,637,933 - 41,650,419 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12042,728,239 - 42,739,112 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2042,729,435 - 42,738,252 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBPJL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,040,310 - 51,052,913 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,033,551 - 51,046,021 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02041,637,933 - 41,650,419 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12042,728,239 - 42,739,112 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2042,729,435 - 42,738,252 (+)Ensemblpanpan1.1panPan2
RBPJL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,306,840 - 45,317,824 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,306,840 - 45,317,824 (+)EnsemblGRCh38hg38GRCh38
GRCh372043,935,480 - 43,946,464 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,368,905 - 43,379,878 (+)NCBINCBI36Build 36hg18NCBI36
Build 342043,368,904 - 43,379,876NCBI
Celera2040,644,024 - 40,654,993 (+)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2040,676,997 - 40,687,980 (+)NCBIHuRef
CHM1_12043,838,044 - 43,849,025 (+)NCBICHM1_1
T2T-CHM13v2.02047,042,717 - 47,053,701 (+)NCBIT2T-CHM13v2.0
Rbpjl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,244,996 - 164,257,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,245,061 - 164,257,368 (+)EnsemblGRCm39 Ensembl
GRCm382164,403,081 - 164,415,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,403,141 - 164,415,448 (+)EnsemblGRCm38mm10GRCm38
MGSCv372164,228,694 - 164,240,948 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362164,094,399 - 164,106,653 (+)NCBIMGSCv36mm8
Celera2170,339,347 - 170,352,574 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.16NCBI
Rbpjl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,553,389 - 173,565,869 (+)NCBIGRCr8
mRatBN7.23153,134,044 - 153,147,421 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,134,140 - 153,146,513 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3156,944,507 - 156,956,867 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,443,458 - 165,455,819 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,187,128 - 163,199,488 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03160,851,836 - 160,865,125 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,852,164 - 160,864,534 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,032,450 - 167,045,411 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,425,120 - 155,437,490 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,333,646 - 155,346,646 (+)NCBI
Celera3151,745,386 - 151,757,752 (+)NCBICelera
Cytogenetic Map3q42NCBI
Rbpjl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544512,017,500 - 12,029,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544512,017,500 - 12,029,507 (-)NCBIChiLan1.0ChiLan1.0
RBPJL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12432,615,934 - 32,625,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2432,612,386 - 32,624,567 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,259,730 - 32,267,075 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,327,178 - 33,332,543 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,322,672 - 33,333,191 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12432,586,448 - 32,593,799 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02432,701,928 - 32,709,369 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,243,153 - 33,253,139 (+)NCBIUU_Cfam_GSD_1.0
Rbpjl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,116,246 - 192,126,156 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,569,970 - 7,578,485 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,569,970 - 7,579,601 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBPJL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,628,313 - 47,641,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,631,432 - 47,642,169 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,238,262 - 53,245,409 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBPJL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,518,416 - 18,531,458 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,520,796 - 18,529,641 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605067,162,417 - 67,172,793 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbpjl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247909,173,653 - 9,184,378 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247909,173,059 - 9,185,271 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000051362   ⟹   ENSPPAP00000028515
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2042,729,435 - 42,738,252 (+)Ensembl
RefSeq Acc Id: XM_003825954   ⟹   XP_003826002
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,040,310 - 51,052,913 (+)NCBI
NHGRI_mPanPan12051,033,551 - 51,046,021 (+)NCBI
Mhudiblu_PPA_v02041,637,933 - 41,650,419 (+)NCBI
PanPan1.12042,728,239 - 42,738,456 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008951334   ⟹   XP_008949582
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,040,310 - 51,050,410 (+)NCBI
NHGRI_mPanPan12051,033,557 - 51,043,518 (+)NCBI
Mhudiblu_PPA_v02041,637,933 - 41,647,916 (+)NCBI
PanPan1.12042,728,239 - 42,738,252 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003826002 (Get FASTA)   NCBI Sequence Viewer  
  XP_008949582 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028515
  ENSPPAP00000028515.1
Reference Protein Sequences
RefSeq Acc Id: XP_003826002   ⟸   XM_003825954
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BFV6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008949582   ⟸   XM_008951334
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BFV6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000028515   ⟸   ENSPPAT00000051362
Protein Domains
Beta-trefoil DNA-binding   RBP-J/Cbf11/Cbf12 DNA binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037289 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051362.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  2.60.40.1450 UniProtKB/TrEMBL
  2.80.10.50 UniProtKB/TrEMBL
InterPro Beta-trefoil_DNA-bd_dom UniProtKB/TrEMBL
  BTD_sf UniProtKB/TrEMBL
  CLS_fam UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  p53-like_TF_DNA-bd UniProtKB/TrEMBL
  RBP-J/Cbf11/Cbf12_DNA-bd UniProtKB/TrEMBL
  RBP-J/Cbf11_DNA-bd_sf UniProtKB/TrEMBL
  RBP-Jkappa_IPT UniProtKB/TrEMBL
NCBI Gene RBPJL ENTREZGENE
PANTHER PTHR10665 UniProtKB/TrEMBL
  RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS-LIKE PROTEIN UniProtKB/TrEMBL
Pfam BTD UniProtKB/TrEMBL
  LAG1-DNAbind UniProtKB/TrEMBL
  TIG_SUH UniProtKB/TrEMBL
SMART BTD UniProtKB/TrEMBL
  LAG1_DNAbind UniProtKB/TrEMBL
Superfamily-SCOP SSF110217 UniProtKB/TrEMBL
  SSF49417 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A2R9BFV6 ENTREZGENE, UniProtKB/TrEMBL