ZNF200 (zinc finger protein 200) - Rat Genome Database

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Gene: ZNF200 (zinc finger protein 200) Pan paniscus
Analyze
Symbol: ZNF200
Name: zinc finger protein 200
RGD ID: 11997208
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); idiopathic generalized epilepsy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,759,924 - 3,773,613 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,544,783 - 7,558,452 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,156,798 - 2,170,324 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,335,173 - 3,348,267 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,335,173 - 3,348,267 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF200
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,759,924 - 3,773,613 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,544,783 - 7,558,452 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,156,798 - 2,170,324 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,335,173 - 3,348,267 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,335,173 - 3,348,267 (-)Ensemblpanpan1.1panPan2
ZNF200
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,222,325 - 3,235,158 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,222,325 - 3,236,221 (-)EnsemblGRCh38hg38GRCh38
GRCh37163,272,325 - 3,285,158 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,212,343 - 3,225,410 (-)NCBINCBI36Build 36hg18NCBI36
Build 34163,212,344 - 3,225,410NCBI
Celera163,477,989 - 3,491,117 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,242,239 - 3,255,360 (-)NCBIHuRef
CHM1_1163,272,303 - 3,285,435 (-)NCBICHM1_1
T2T-CHM13v2.0163,249,433 - 3,263,296 (-)NCBIT2T-CHM13v2.0
Znf200
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,100,879 - 14,122,310 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,099,237 - 14,123,739 (+)NCBIChiLan1.0ChiLan1.0
ZNF200
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,987,189 - 38,002,635 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,987,865 - 38,002,638 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,241,879 - 39,244,479 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,299,155 - 38,314,513 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,299,497 - 38,314,513 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1637,985,199 - 38,000,601 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0637,957,705 - 37,973,076 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,433,306 - 38,448,679 (+)NCBIUU_Cfam_GSD_1.0
Znf200
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,708,592 - 105,720,584 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936694989,709 - 1,003,183 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936694988,300 - 998,829 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF200
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl338,952,689 - 38,973,906 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1338,952,692 - 38,973,927 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF200
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,950,385 - 2,963,806 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,950,114 - 2,963,494 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606827,865,039 - 27,878,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf200
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248241,000,627 - 1,022,920 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248241,000,895 - 1,023,963 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003815146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003815147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034939665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057300164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000034504   ⟹   ENSPPAP00000011843
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl163,335,173 - 3,348,267 (-)Ensembl
RefSeq Acc Id: XM_003815146   ⟹   XP_003815194
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,054 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,557,913 (-)NCBI
Mhudiblu_PPA_v0162,156,798 - 2,169,937 (-)NCBI
PanPan1.1163,335,173 - 3,348,267 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003815147   ⟹   XP_003815195
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,547 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,386 (-)NCBI
Mhudiblu_PPA_v0162,156,798 - 2,170,324 (-)NCBI
PanPan1.1163,335,173 - 3,348,267 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055100740   ⟹   XP_054956715
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,568 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,407 (-)NCBI
RefSeq Acc Id: XM_055100741   ⟹   XP_054956716
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,610 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,449 (-)NCBI
RefSeq Acc Id: XM_055100743   ⟹   XP_054956718
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,568 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,407 (-)NCBI
RefSeq Acc Id: XM_055100744   ⟹   XP_054956719
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,054 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,557,913 (-)NCBI
RefSeq Acc Id: XM_055100745   ⟹   XP_054956720
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,600 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,439 (-)NCBI
RefSeq Acc Id: XM_055100746   ⟹   XP_054956721
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,557 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,396 (-)NCBI
RefSeq Acc Id: XM_055100747   ⟹   XP_054956722
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,613 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,452 (-)NCBI
RefSeq Acc Id: XM_055100748   ⟹   XP_054956723
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,613 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,452 (-)NCBI
RefSeq Acc Id: XM_055100749   ⟹   XP_054956724
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,545 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,384 (-)NCBI
RefSeq Acc Id: XM_055100750   ⟹   XP_054956725
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,557 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,558,396 (-)NCBI
RefSeq Acc Id: XM_057300164   ⟹   XP_057156147
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,054 (-)NCBI
NHGRI_mPanPan1167,544,783 - 7,557,913 (-)NCBI
RefSeq Acc Id: XM_063598295   ⟹   XP_063454365
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,759,924 - 3,773,054 (-)NCBI
RefSeq Acc Id: XP_003815194   ⟸   XM_003815146
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003815195   ⟸   XM_003815147
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000011843   ⟸   ENSPPAT00000034504
RefSeq Acc Id: XP_054956723   ⟸   XM_055100748
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956722   ⟸   XM_055100747
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956716   ⟸   XM_055100741
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956720   ⟸   XM_055100745
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956718   ⟸   XM_055100743
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956715   ⟸   XM_055100740
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956725   ⟸   XM_055100750
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956721   ⟸   XM_055100746
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956724   ⟸   XM_055100749
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956719   ⟸   XM_055100744
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156147   ⟸   XM_057300164
- UniProtKB: A0A2R9A3H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454365   ⟸   XM_063598295
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029115 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034504.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100978002 UniProtKB/TrEMBL
NCBI Gene ZNF200 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 200 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 200 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9A3H8 ENTREZGENE, UniProtKB/TrEMBL