RHOC (ras homolog family member C) - Rat Genome Database

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Gene: RHOC (ras homolog family member C) Pan paniscus
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Symbol: RHOC
Name: ras homolog family member C
RGD ID: 11996972
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); protein kinase binding (inferred); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH amenorrhea (ortholog); breast cancer (ortholog); genetic disease (ortholog); FOUND IN cleavage furrow (inferred); cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rho-related GTP-binding protein RhoC
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,328,960 - 114,335,138 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,477,089 - 113,483,288 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01115,353,868 - 115,360,036 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11124,993,063 - 124,998,968 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1124,993,063 - 125,001,708 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RHOC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,328,960 - 114,335,138 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,477,089 - 113,483,288 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01115,353,868 - 115,360,036 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11124,993,063 - 124,998,968 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1124,993,063 - 125,001,708 (+)Ensemblpanpan1.1panPan2
RHOC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381112,701,131 - 112,707,408 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1112,701,127 - 112,707,434 (-)EnsemblGRCh38hg38GRCh38
GRCh371113,243,753 - 113,250,030 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,045,272 - 113,051,548 (-)NCBINCBI36Build 36hg18NCBI36
Build 341112,955,796 - 112,961,762NCBI
Celera1111,474,221 - 111,480,469 (-)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1111,102,116 - 111,108,421 (-)NCBIHuRef
CHM1_11113,358,995 - 113,365,227 (-)NCBICHM1_1
T2T-CHM13v2.01112,713,708 - 112,719,957 (-)NCBIT2T-CHM13v2.0
Rhoc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,696,350 - 104,701,775 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,695,691 - 104,701,775 (+)EnsemblGRCm39 Ensembl
GRCm383104,789,034 - 104,794,459 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,788,375 - 104,794,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv373104,591,952 - 104,597,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363104,917,108 - 104,922,515 (+)NCBIMGSCv36mm8
Celera3106,984,393 - 106,989,818 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.86NCBI
Rhoc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82194,975,586 - 194,981,637 (+)NCBIGRCr8
mRatBN7.22192,287,065 - 192,293,292 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2192,287,130 - 192,295,306 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2199,881,601 - 199,887,650 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02197,753,887 - 197,759,938 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02192,570,831 - 192,576,882 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02207,271,692 - 207,278,010 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2207,271,853 - 207,279,314 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,690,856 - 226,697,174 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42200,048,056 - 200,054,107 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12200,010,698 - 200,017,126 (+)NCBI
Celera2184,753,781 - 184,759,832 (+)NCBICelera
Cytogenetic Map2q34NCBI
Rhoc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,115,095 - 16,117,869 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,115,095 - 16,117,736 (-)NCBIChiLan1.0ChiLan1.0
RHOC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11762,868,373 - 62,872,322 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1762,379,903 - 62,385,777 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01764,039,576 - 64,045,450 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1764,039,594 - 64,046,097 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11762,774,224 - 62,780,085 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01762,832,308 - 62,838,186 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01763,592,021 - 63,597,895 (+)NCBIUU_Cfam_GSD_1.0
Rhoc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,219,481 - 16,222,601 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366901,255,126 - 1,258,288 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHOC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,731,539 - 107,737,705 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,731,713 - 107,737,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,848,790 - 117,854,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RHOC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12020,932,533 - 20,938,703 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2020,936,018 - 20,938,284 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603823,749,488 - 23,755,659 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rhoc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247728,479,015 - 8,486,171 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247728,481,826 - 8,487,530 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000041375   ⟹   ENSPPAP00000018642
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1124,993,063 - 125,001,708 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000041399   ⟹   ENSPPAP00000018663
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1124,996,330 - 124,997,783 (+)Ensembl
RefSeq Acc Id: XM_008963052   ⟹   XP_008961300
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21114,329,155 - 114,335,138 (+)NCBI
NHGRI_mPanPan11113,477,332 - 113,483,288 (+)NCBI
Mhudiblu_PPA_v01115,353,868 - 115,359,825 (-)NCBI
PanPan1.11124,993,069 - 124,998,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008963057   ⟹   XP_008961305
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21114,328,960 - 114,335,138 (+)NCBI
NHGRI_mPanPan11113,477,089 - 113,483,288 (+)NCBI
Mhudiblu_PPA_v01115,353,868 - 115,360,036 (-)NCBI
PanPan1.11124,993,069 - 124,998,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055102682   ⟹   XP_054958657
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21114,329,153 - 114,335,138 (+)NCBI
NHGRI_mPanPan11113,477,395 - 113,483,288 (+)NCBI
RefSeq Acc Id: XM_057300423   ⟹   XP_057156406
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21114,329,296 - 114,335,138 (+)NCBI
NHGRI_mPanPan11113,477,532 - 113,483,288 (+)NCBI
RefSeq Acc Id: XM_063606335   ⟹   XP_063462405
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21114,329,198 - 114,335,138 (+)NCBI
RefSeq Acc Id: XM_063606337   ⟹   XP_063462407
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21114,329,212 - 114,335,138 (+)NCBI
RefSeq Acc Id: XM_063606338   ⟹   XP_063462408
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21114,329,282 - 114,335,138 (+)NCBI
RefSeq Acc Id: XP_008961300   ⟸   XM_008963052
- UniProtKB: A0A2R9AMR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008961305   ⟸   XM_008963057
- UniProtKB: A0A2R9AMR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000018642   ⟸   ENSPPAT00000041375
RefSeq Acc Id: ENSPPAP00000018663   ⟸   ENSPPAT00000041399
RefSeq Acc Id: XP_054958657   ⟸   XM_055102682
- UniProtKB: A0A2R9AMR5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156406   ⟸   XM_057300423
- UniProtKB: A0A2R9AMR5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063462405   ⟸   XM_063606335
- UniProtKB: A0A2R9AMR5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063462407   ⟸   XM_063606337
- UniProtKB: A0A2R9AMR5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063462408   ⟸   XM_063606338
- UniProtKB: A0A2R9AMR5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032447 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041375.1 UniProtKB/TrEMBL
  ENSPPAT00000041399.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
  Small_GTPase_Rho UniProtKB/TrEMBL
KEGG Report pps:103784816 UniProtKB/TrEMBL
NCBI Gene RHOC ENTREZGENE
PANTHER PTHR24072 UniProtKB/TrEMBL
  RHO-RELATED GTP-BINDING PROTEIN RHOC UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9AMR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AND6_PANPA UniProtKB/TrEMBL