EMD (emerin) - Rat Genome Database
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Gene: EMD (emerin) Pan paniscus
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Symbol: EMD
Name: emerin
RGD ID: 11995328
Description: ENCODES a protein that exhibits actin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of fibroblast proliferation (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); cardiomyopathy (ortholog); FOUND IN cortical endoplasmic reticulum (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v0X143,792,178 - 143,794,530 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
EMD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v0X143,792,178 - 143,794,530 (-)NCBIMhudiblu_PPA_v0panPan3
EMD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX154,379,197 - 154,381,523 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 EnsemblX154,379,273 - 154,381,523 (+)EnsemblGRCh38hg38GRCh38
GRCh38X154,379,236 - 154,381,523 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X153,607,655 - 153,609,883 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,260,981 - 153,263,075 (+)NCBINCBI36hg18NCBI36
Build 34X153,128,633 - 153,130,728NCBI
CeleraX153,768,677 - 153,770,963 (+)NCBI
Cytogenetic MapXq28NCBI
HuRefX142,185,074 - 142,187,360 (+)NCBIHuRef
CHM1_1X153,519,221 - 153,521,507 (+)NCBICHM1_1
Emd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,298,272 - 73,305,169 (+)NCBIGRCm39mm39
GRCm39 EnsemblX73,298,293 - 73,305,154 (+)Ensembl
GRCm38X74,254,674 - 74,261,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,254,687 - 74,261,548 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,261,032 - 74,261,374 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,500,178 - 71,503,086 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X70,507,559 - 70,510,467 (+)NCBImm8
CeleraX65,508,981 - 65,511,889 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.92NCBI
Emd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X152,038,990 - 152,042,190 (+)NCBI
Rnor_6.0 EnsemblX156,452,818 - 156,456,035 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X156,452,847 - 156,455,858 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01152,192,993 - 152,196,004 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,351,228 - 160,354,239 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X160,427,431 - 160,430,442 (-)NCBI
Celera1135,854,577 - 135,857,588 (-)NCBICelera
Cytogenetic MapXq37NCBI
Emd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580864,532 - 866,904 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580864,532 - 866,904 (-)NCBIChiLan1.0ChiLan1.0
EMD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,050,309 - 122,052,629 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,050,455 - 122,052,524 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX107,379,062 - 107,381,339 (-)NCBI
ROS_Cfam_1.0X125,192,020 - 125,194,303 (-)NCBI
UMICH_Zoey_3.1X120,961,089 - 120,963,363 (-)NCBI
UNSW_CanFamBas_1.0X123,475,997 - 123,478,261 (-)NCBI
UU_Cfam_GSD_1.0X123,237,823 - 123,240,104 (-)NCBI
Emd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,389,931 - 119,392,424 (+)NCBI
SpeTri2.0NW_0049368091,127,701 - 1,130,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X124,883,047 - 124,885,429 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EMD
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,689,588 - 128,692,105 (+)NCBI
ChlSab1.1 EnsemblX128,689,588 - 128,692,625 (+)Ensembl
Emd
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946805,573 - 808,001 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003804719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003804719   ⟹   XP_003804767
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0X143,792,178 - 143,794,530 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003804767 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003804767   ⟸   XM_003804719
- Sequence:
Protein Domains
LEM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027507 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000008530 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000008534 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031166 UniProtKB/TrEMBL
  ENSPPAT00000031170 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.40 UniProtKB/TrEMBL
InterPro Emerin UniProtKB/TrEMBL
  LEM/LEM-like_dom_sf UniProtKB/TrEMBL
  LEM_dom UniProtKB/TrEMBL
  LEM_emerin UniProtKB/TrEMBL
KEGG Report pps:100980664 UniProtKB/TrEMBL
NCBI Gene EMD ENTREZGENE
PANTHER PTHR15171 UniProtKB/TrEMBL
Pfam LEM UniProtKB/TrEMBL
PROSITE LEM UniProtKB/TrEMBL
SMART LEM UniProtKB/TrEMBL
Superfamily-SCOP SSF63451 UniProtKB/TrEMBL
UniProt A0A2R8ZU88_PANPA UniProtKB/TrEMBL
  A0A2R8ZU91_PANPA UniProtKB/TrEMBL