CETP (cholesteryl ester transfer protein) - Rat Genome Database

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Gene: CETP (cholesteryl ester transfer protein) Pan paniscus
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Symbol: CETP
Name: cholesteryl ester transfer protein
RGD ID: 11992072
Description: ENCODES a protein that exhibits cholesterol binding (inferred); cholesterol transfer activity (inferred); lipid binding (inferred); INVOLVED IN cholesterol homeostasis (inferred); cholesterol metabolic process (inferred); cholesterol transport (inferred); PARTICIPATES IN reverse cholesterol transport pathway; ASSOCIATED WITH Animal Disease Models (ortholog); atherosclerosis (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); high-density lipoprotein particle (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,434,137 - 66,456,246 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,354,839 - 72,376,768 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,239,756 - 37,261,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,374,351 - 56,396,282 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,374,363 - 56,396,103 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CETP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,434,137 - 66,456,246 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,354,839 - 72,376,768 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,239,756 - 37,261,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,374,351 - 56,396,282 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,374,363 - 56,396,103 (+)Ensemblpanpan1.1panPan2
CETP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,961,950 - 56,983,845 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1656,961,923 - 56,983,845 (+)EnsemblGRCh38hg38GRCh38
GRCh371656,995,862 - 57,017,757 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,553,263 - 55,575,257 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,553,262 - 55,575,257NCBI
Celera1641,496,117 - 41,518,031 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1642,865,207 - 42,887,119 (+)NCBIHuRef
CHM1_11658,403,764 - 58,425,674 (+)NCBICHM1_1
T2T-CHM13v2.01662,758,278 - 62,780,157 (+)NCBIT2T-CHM13v2.0
Cetp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,456,004 - 50,473,890 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,115,120 - 9,133,073 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,115,126 - 9,133,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CETP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1542,909,994 - 42,936,277 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl542,910,226 - 42,936,277 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,383,519 - 33,438,188 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cetp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474629,035,282 - 29,053,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000056425   ⟹   ENSPPAP00000033549
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1656,374,363 - 56,396,103 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000056429   ⟹   ENSPPAP00000033553
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1656,374,363 - 56,396,103 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000056434   ⟹   ENSPPAP00000033558
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1656,375,468 - 56,396,103 (+)Ensembl
RefSeq Acc Id: XM_034940233   ⟹   XP_034796124
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21866,434,137 - 66,456,246 (+)NCBI
NHGRI_mPanPan11672,354,839 - 72,376,768 (+)NCBI
Mhudiblu_PPA_v01637,239,776 - 37,261,859 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034796124 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033549.1
  ENSPPAP00000033553.1
  ENSPPAP00000033558.1
RefSeq Acc Id: XP_034796124   ⟸   XM_034940233
- UniProtKB: A0A2R9C4V8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000033549   ⟸   ENSPPAT00000056425
Ensembl Acc Id: ENSPPAP00000033553   ⟸   ENSPPAT00000056429
Ensembl Acc Id: ENSPPAP00000033558   ⟸   ENSPPAT00000056434
Protein Domains
Lipid-binding serum glycoprotein C-terminal   Lipid-binding serum glycoprotein N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056425.1 UniProtKB/TrEMBL
  ENSPPAT00000056429.1 UniProtKB/TrEMBL
  ENSPPAT00000056434.1 UniProtKB/TrEMBL
InterPro Bactericidal_perm-incr_a/b_dom UniProtKB/TrEMBL
  Cholesteryl_ester_transfer UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_C UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_N UniProtKB/TrEMBL
NCBI Gene CETP ENTREZGENE
PANTHER CHOLESTERYL ESTER TRANSFER PROTEIN UniProtKB/TrEMBL
  PTHR47616 UniProtKB/TrEMBL
Pfam LBP_BPI_CETP UniProtKB/TrEMBL
  LBP_BPI_CETP_C UniProtKB/TrEMBL
PIRSF Cholesteryl_ester_transf UniProtKB/TrEMBL
SMART BPI1 UniProtKB/TrEMBL
  BPI2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55394 UniProtKB/TrEMBL
UniProt A0A2R9BV53_PANPA UniProtKB/TrEMBL
  A0A2R9BV57_PANPA UniProtKB/TrEMBL
  A0A2R9C4V8 ENTREZGENE, UniProtKB/TrEMBL