NPAS4 (neuronal PAS domain protein 4) - Rat Genome Database

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Gene: NPAS4 (neuronal PAS domain protein 4) Pan paniscus
Analyze
Symbol: NPAS4
Name: neuronal PAS domain protein 4
RGD ID: 11990782
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN cellular response to corticosterone stimulus (ortholog); inhibitory postsynaptic potential (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); congenital muscular dystrophy-dystroglycanopathy type A13 (ortholog); FOUND IN nucleus (inferred); postsynapse (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuronal PAS domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,646,711 - 67,652,386 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,689,424 - 68,695,098 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,778,329 - 61,784,010 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,103,096 - 65,108,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,103,097 - 65,108,825 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NPAS4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,646,711 - 67,652,386 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,689,424 - 68,695,098 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,778,329 - 61,784,010 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,103,096 - 65,108,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,103,097 - 65,108,825 (+)Ensemblpanpan1.1panPan2
NPAS4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,409,158 - 66,426,707 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,421,035 - 66,426,707 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,188,475 - 66,194,178 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,945,051 - 65,950,753 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,945,050 - 65,950,753NCBI
Celera1163,508,508 - 63,514,210 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,516,143 - 62,521,845 (+)NCBIHuRef
CHM1_11166,072,529 - 66,078,231 (+)NCBICHM1_1
T2T-CHM13v2.01166,405,041 - 66,423,054 (+)NCBIT2T-CHM13v2.0
Npas4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,034,381 - 5,053,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,034,383 - 5,040,344 (-)EnsemblGRCm39 Ensembl
GRCm38194,984,353 - 5,003,439 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,984,355 - 4,990,316 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,984,355 - 4,989,971 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,984,355 - 4,989,971 (-)NCBIMGSCv36mm8
Celera194,853,421 - 4,859,037 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.2NCBI
Npas4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,710,640 - 211,728,038 (-)NCBIGRCr8
mRatBN7.21202,281,260 - 202,298,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,281,958 - 202,286,724 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,634,984 - 210,639,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,727,377 - 217,732,147 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,418,406 - 210,423,176 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,260,310 - 220,278,177 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,261,008 - 220,265,772 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,191,333 - 227,209,087 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,597,735 - 207,602,499 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,751,187 - 207,755,952 (-)NCBI
Celera1199,821,938 - 199,826,702 (-)NCBICelera
Cytogenetic Map1q43NCBI
Npas4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,907,322 - 18,913,428 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,907,328 - 18,913,088 (-)NCBIChiLan1.0ChiLan1.0
NPAS4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,905,614 - 50,912,119 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,905,611 - 50,911,086 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,514,917 - 49,520,038 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,944,546 - 51,949,657 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,943,941 - 51,949,559 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,045,124 - 51,050,230 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,618,773 - 50,623,881 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,408,871 - 51,413,979 (-)NCBIUU_Cfam_GSD_1.0
Npas4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,702,444 - 6,718,932 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,144,793 - 3,150,377 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,144,829 - 3,150,307 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPAS4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,990,327 - 5,995,929 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,990,936 - 5,995,940 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,066,741 - 5,072,489 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPAS4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,856,222 - 7,874,812 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,856,939 - 7,862,052 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,136,036 - 105,154,282 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Npas4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,954,323 - 19,959,360 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,953,746 - 19,959,472 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000045983   ⟹   ENSPPAP00000023162
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1165,103,097 - 65,108,825 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000045986   ⟹   ENSPPAP00000023165
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1165,103,315 - 65,105,624 (+)Ensembl
RefSeq Acc Id: XM_003828672   ⟹   XP_003828720
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2967,646,712 - 67,652,386 (+)NCBI
NHGRI_mPanPan11168,689,424 - 68,695,098 (+)NCBI
Mhudiblu_PPA_v01161,778,329 - 61,784,010 (+)NCBI
PanPan1.11165,103,097 - 65,108,825 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008954115   ⟹   XP_008952363
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2967,646,711 - 67,652,386 (+)NCBI
NHGRI_mPanPan11168,689,424 - 68,695,098 (+)NCBI
Mhudiblu_PPA_v01161,778,336 - 61,784,010 (+)NCBI
PanPan1.11165,103,096 - 65,108,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055094550   ⟹   XP_054950525
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2967,648,138 - 67,652,386 (+)NCBI
NHGRI_mPanPan11168,690,850 - 68,695,098 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003828720 (Get FASTA)   NCBI Sequence Viewer  
  XP_008952363 (Get FASTA)   NCBI Sequence Viewer  
  XP_054950525 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000023162
  ENSPPAP00000023162.1
  ENSPPAP00000023165.1
RefSeq Acc Id: XP_008952363   ⟸   XM_008954115
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003828720   ⟸   XM_003828672
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B797 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000023165   ⟸   ENSPPAT00000045986
RefSeq Acc Id: ENSPPAP00000023162   ⟸   ENSPPAT00000045983
RefSeq Acc Id: XP_054950525   ⟸   XM_055094550
- Peptide Label: isoform X3
Protein Domains
bHLH   PAS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045983.1 UniProtKB/TrEMBL
  ENSPPAT00000045986.1 UniProtKB/TrEMBL
Gene3D-CATH PAS domain UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  PAS_fold_3 UniProtKB/TrEMBL
KEGG Report pps:100970638 UniProtKB/TrEMBL
NCBI Gene NPAS4 ENTREZGENE
PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA UniProtKB/TrEMBL
  NEURONAL PAS DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam PAS_3 UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
SMART PAS UniProtKB/TrEMBL
Superfamily-SCOP SSF55785 UniProtKB/TrEMBL
UniProt A0A2R9B0N9_PANPA UniProtKB/TrEMBL
  A0A2R9B797 ENTREZGENE, UniProtKB/TrEMBL