CPSF4L (cleavage and polyadenylation specific factor 4 like) - Rat Genome Database

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Gene: CPSF4L (cleavage and polyadenylation specific factor 4 like) Pan paniscus
Analyze
Symbol: CPSF4L
Name: cleavage and polyadenylation specific factor 4 like
RGD ID: 11989663
Description: ENCODES a protein that exhibits metal ion binding (inferred); RNA binding (inferred); INVOLVED IN mRNA 3'-end processing (inferred); mRNA processing (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mRNA cleavage and polyadenylation specificity factor complex (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative cleavage and polyadenylation specificity factor subunit 4-like protein-like
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21989,258,090 - 89,285,785 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11794,085,195 - 94,110,375 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01767,170,897 - 67,192,519 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11772,632,536 - 72,645,845 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CPSF4L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21989,258,090 - 89,285,785 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11794,085,195 - 94,110,375 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01767,170,897 - 67,192,519 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11772,632,536 - 72,645,845 (-)NCBIpanpan1.1PanPan1.1panPan2
CPSF4L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381773,242,101 - 73,263,778 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1773,248,449 - 73,262,352 (-)EnsemblGRCh38hg38GRCh38
GRCh371771,244,588 - 71,258,019 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361768,761,636 - 68,769,552 (-)NCBINCBI36Build 36hg18NCBI36
Celera1767,827,709 - 67,841,141 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1766,653,754 - 66,667,193 (-)NCBIHuRef
CHM1_11771,308,668 - 71,322,105 (-)NCBICHM1_1
T2T-CHM13v2.01774,130,285 - 74,153,506 (-)NCBIT2T-CHM13v2.0
Cpsf4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911113,588,997 - 113,601,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11113,588,998 - 113,600,843 (-)EnsemblGRCm39 Ensembl
GRCm3811113,698,171 - 113,710,167 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11113,698,172 - 113,710,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711113,559,485 - 113,571,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611113,514,261 - 113,526,107 (-)NCBIMGSCv36mm8
Celera11125,462,926 - 125,474,769 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.17NCBI
Cpsf4l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81099,241,187 - 99,255,207 (-)NCBIGRCr8
mRatBN7.21098,741,816 - 98,756,069 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1098,743,649 - 98,751,590 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010102,213,892 - 102,227,708 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10102,215,722 - 102,227,554 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.010101,893,265 - 101,906,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410103,327,521 - 103,339,565 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110103,341,890 - 103,353,935 (-)NCBI
Celera1097,348,828 - 97,362,517 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
CPSF4L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,924,334 - 6,929,076 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha97,543,932 - 7,550,993 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.097,595,247 - 7,602,267 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.197,635,657 - 7,642,718 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.097,738,553 - 7,745,614 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.097,799,311 - 7,806,372 (+)NCBIUU_Cfam_GSD_1.0
Cpsf4l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056027,479,199 - 7,489,426 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655977,469 - 983,241 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655977,413 - 985,067 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPSF4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1127,669,819 - 7,697,532 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2127,951,162 - 7,965,164 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPSF4L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11648,358,899 - 48,394,504 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607719,196,035 - 19,215,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034942811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034942811   ⟹   XP_034798702
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21989,258,090 - 89,285,785 (-)NCBI
NHGRI_mPanPan11794,085,195 - 94,110,375 (-)NCBI
Mhudiblu_PPA_v01767,170,897 - 67,192,519 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034798702 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027864.1
  ENSPPAP00000027868.1
RefSeq Acc Id: XP_034798702   ⟸   XM_034942811
Protein Domains
C3H1-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037000 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050707.1 UniProtKB/TrEMBL
  ENSPPAT00000050711.1 UniProtKB/TrEMBL
Gene3D-CATH Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro CPSF4/Yth1 UniProtKB/TrEMBL
  Znf-CCCH_3 UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
NCBI Gene CPSF4L ENTREZGENE
PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-LIKE PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR23102 UniProtKB/TrEMBL
Pfam zf-CCCH_2 UniProtKB/TrEMBL
  zf-CCCH_3 UniProtKB/TrEMBL
  zf_CCCH_4 UniProtKB/TrEMBL
PROSITE ZF_C3H1 UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/TrEMBL
UniProt A0A2R9BE04_PANPA UniProtKB/TrEMBL
  A0A2R9BF97_PANPA UniProtKB/TrEMBL