MRPL55 (mitochondrial ribosomal protein L55) - Rat Genome Database

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Gene: MRPL55 (mitochondrial ribosomal protein L55) Pan paniscus
Analyze
Symbol: MRPL55
Name: mitochondrial ribosomal protein L55
RGD ID: 11988207
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); multiple mitochondrial dysfunctions syndrome 3 (ortholog); FOUND IN mitochondrion (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L55, mitochondrial; large ribosomal subunit protein mL55
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,497,118 - 21,499,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,435,362 - 21,437,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,508,861 - 203,511,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,720,030 - 208,722,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,720,030 - 208,722,668 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,497,118 - 21,499,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,435,362 - 21,437,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,508,861 - 203,511,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,720,030 - 208,722,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,720,030 - 208,722,668 (-)Ensemblpanpan1.1panPan2
MRPL55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,106,685 - 228,109,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,106,679 - 228,109,312 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,294,386 - 228,297,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,361,003 - 226,363,627 (-)NCBINCBI36Build 36hg18NCBI36
Celera1201,484,612 - 201,487,245 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,809,501 - 198,812,134 (-)NCBIHuRef
CHM1_11229,566,725 - 229,569,358 (-)NCBICHM1_1
T2T-CHM13v2.01227,295,671 - 227,315,175 (-)NCBIT2T-CHM13v2.0
Mrpl55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,093,312 - 59,096,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,093,312 - 59,096,960 (+)EnsemblGRCm39 Ensembl
GRCm381159,202,486 - 59,206,138 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,202,486 - 59,206,134 (+)EnsemblGRCm38mm10GRCm38
MGSCv371159,016,019 - 59,019,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,018,712 - 59,022,197 (+)NCBIMGSCv36mm8
Celera1163,967,585 - 63,971,075 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1137.05NCBI
Mrpl55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,488,252 - 44,491,401 (+)NCBIGRCr8
mRatBN7.21043,988,676 - 43,991,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,988,683 - 43,991,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,682,503 - 48,685,658 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,172,861 - 48,176,016 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,676,458 - 43,679,613 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,552,794 - 45,555,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,552,795 - 45,555,943 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,308,861 - 45,312,028 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,506,262 - 45,509,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,519,887 - 45,522,767 (+)NCBI
Celera1043,251,943 - 43,255,091 (+)NCBICelera
Cytogenetic Map10q22NCBI
Mrpl55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581312,256 - 314,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581312,256 - 314,138 (+)NCBIChiLan1.0ChiLan1.0
MRPL55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114826,731 - 830,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14826,726 - 830,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14321,627 - 324,914 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014547,149 - 550,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14547,182 - 550,435 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114737,958 - 741,246 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014518,782 - 522,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014504,671 - 507,961 (+)NCBIUU_Cfam_GSD_1.0
Mrpl55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,766,963 - 87,770,562 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936864108,645 - 111,838 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,243,294 - 51,247,594 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,243,257 - 51,247,626 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2278,534,029 - 78,535,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL55
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,618,831 - 1,621,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,619,917 - 1,621,385 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,500,040 - 1,502,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl55
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937878,596 - 881,003 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937878,596 - 881,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003804764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003804766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003804767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008963501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057300919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000037461   ⟹   ENSPPAP00000014773
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1208,720,030 - 208,722,668 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000037469   ⟹   ENSPPAP00000014781
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1208,720,111 - 208,721,612 (-)Ensembl
RefSeq Acc Id: XM_003804764   ⟹   XP_003804812
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,118 - 21,499,779 (+)NCBI
NHGRI_mPanPan1121,435,430 - 21,437,964 (+)NCBI
Mhudiblu_PPA_v01203,508,863 - 203,511,473 (-)NCBI
PanPan1.11208,720,030 - 208,722,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003804766   ⟹   XP_003804814
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,146 - 21,499,779 (+)NCBI
NHGRI_mPanPan1121,435,364 - 21,437,964 (+)NCBI
Mhudiblu_PPA_v01203,508,863 - 203,511,486 (-)NCBI
PanPan1.11208,720,030 - 208,722,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003804767   ⟹   XP_003804815
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
NHGRI_mPanPan1121,435,365 - 21,437,964 (+)NCBI
Mhudiblu_PPA_v01203,508,863 - 203,511,486 (-)NCBI
PanPan1.11208,720,030 - 208,722,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008963501   ⟹   XP_008961749
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
NHGRI_mPanPan1121,435,362 - 21,437,964 (+)NCBI
Mhudiblu_PPA_v01203,508,863 - 203,511,466 (-)NCBI
PanPan1.11208,720,030 - 208,722,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_057300919   ⟹   XP_057156902
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
NHGRI_mPanPan1121,435,365 - 21,437,964 (+)NCBI
RefSeq Acc Id: XM_063596773   ⟹   XP_063452843
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,140 - 21,499,779 (+)NCBI
RefSeq Acc Id: XM_063596780   ⟹   XP_063452850
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
RefSeq Acc Id: XM_063596782   ⟹   XP_063452852
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
RefSeq Acc Id: XM_063596783   ⟹   XP_063452853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
RefSeq Acc Id: XM_063596785   ⟹   XP_063452855
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
RefSeq Acc Id: XM_063596787   ⟹   XP_063452857
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
RefSeq Acc Id: XM_063596790   ⟹   XP_063452860
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
RefSeq Acc Id: XM_063596793   ⟹   XP_063452863
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,145 - 21,499,779 (+)NCBI
RefSeq Acc Id: XM_063596804   ⟹   XP_063452874
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,497,161 - 21,499,779 (+)NCBI
RefSeq Acc Id: XP_003804814   ⟸   XM_003804766
- UniProtKB: A0A2R9AGV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008961749   ⟸   XM_008963501
- UniProtKB: A0A2R9AGV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003804815   ⟸   XM_003804767
- UniProtKB: A0A2R9AGV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003804812   ⟸   XM_003804764
- UniProtKB: A0A2R9AGV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000014781   ⟸   ENSPPAT00000037469
RefSeq Acc Id: ENSPPAP00000014773   ⟸   ENSPPAT00000037461
RefSeq Acc Id: XP_057156902   ⟸   XM_057300919
- UniProtKB: A0A2R9AGV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452843   ⟸   XM_063596773
RefSeq Acc Id: XP_063452852   ⟸   XM_063596782
RefSeq Acc Id: XP_063452855   ⟸   XM_063596785
RefSeq Acc Id: XP_063452853   ⟸   XM_063596783
RefSeq Acc Id: XP_063452860   ⟸   XM_063596790
RefSeq Acc Id: XP_063452857   ⟸   XM_063596787
RefSeq Acc Id: XP_063452850   ⟸   XM_063596780
RefSeq Acc Id: XP_063452863   ⟸   XM_063596793
RefSeq Acc Id: XP_063452874   ⟸   XM_063596804


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030545 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000037461.1 UniProtKB/TrEMBL
  ENSPPAT00000037469.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.130.20 UniProtKB/TrEMBL
InterPro Ribosomal_L55_mit UniProtKB/TrEMBL
  Ribosomal_L55_sf UniProtKB/TrEMBL
KEGG Report pps:100971153 UniProtKB/TrEMBL
NCBI Gene MRPL55 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L55, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR34095 UniProtKB/TrEMBL
Pfam Mitoc_L55 UniProtKB/TrEMBL
UniProt A0A2R9AD02_PANPA UniProtKB/TrEMBL
  A0A2R9AGV4 ENTREZGENE, UniProtKB/TrEMBL