CLCN5 (chloride voltage-gated channel 5) - Rat Genome Database
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Gene: CLCN5 (chloride voltage-gated channel 5) Pan paniscus
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Symbol: CLCN5
Name: chloride voltage-gated channel 5
RGD ID: 11986326
Description: ENCODES a protein that exhibits identical protein binding (ortholog); voltage-gated chloride channel activity (ortholog); INVOLVED IN chloride transport (ortholog); endocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bethlem Myopathy 1 (ortholog); Dent disease (ortholog); FOUND IN apical part of cell (ortholog); cytosol (ortholog); endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: H(+)/Cl(-) exchange transporter 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X49,851,472 - 50,013,375 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,854,165 - 50,006,363 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X42,137,523 - 42,299,716 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CLCN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X49,851,472 - 50,013,375 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,854,165 - 50,006,363 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X42,137,523 - 42,299,716 (+)NCBIMhudiblu_PPA_v0panPan3
CLCN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX49,922,596 - 50,099,235 (+)EnsemblGRCh38hg38GRCh38
GRCh38X49,922,596 - 50,099,231 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X49,687,206 - 49,863,887 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X49,687,225 - 49,863,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X49,718,955 - 49,750,632 (+)NCBINCBI36hg18NCBI36
Build 34X49,537,191 - 49,560,557NCBI
CeleraX53,756,528 - 53,932,992 (+)NCBI
Cytogenetic MapXp11.23NCBI
HuRefX47,156,646 - 47,337,277 (+)NCBIHuRef
CHM1_1X49,766,989 - 49,943,526 (+)NCBICHM1_1
Clcn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,020,049 - 7,185,597 (-)NCBIGRCm39mm39
GRCm38X7,153,810 - 7,319,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,153,810 - 7,319,358 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X6,735,945 - 6,765,840 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X6,316,432 - 6,345,645 (-)NCBImm8
CeleraX4,285,826 - 4,305,500 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.21NCBI
Clcn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X15,185,353 - 15,339,977 (+)NCBI
Rnor_6.0 EnsemblX16,050,780 - 16,196,789 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X16,170,585 - 16,196,691 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X16,955,709 - 16,981,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X27,383,769 - 27,409,877 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X27,437,237 - 27,463,346 (+)NCBI
CeleraX15,387,005 - 15,413,019 (+)NCBICelera
RH 3.4 MapX169.21RGD
Cytogenetic MapXq12NCBI
Clcn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555431,077,007 - 1,250,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555431,076,988 - 1,256,352 (+)NCBIChiLan1.0ChiLan1.0
CLCN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX42,704,627 - 42,853,812 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X42,705,789 - 42,860,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Clcn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367211,552,312 - 1,602,360 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLCN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,613,756 - 43,813,140 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,779,016 - 43,809,472 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,706,075 - 48,736,547 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLCN5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,772,176 - 46,934,886 (+)NCBI
ChlSab1.1 EnsemblX46,772,305 - 46,927,861 (+)Ensembl
Clcn5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248931,390,417 - 1,581,457 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000036143   ⟹   ENSPPAP00000013471
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX49,854,165 - 50,006,363 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000036152   ⟹   ENSPPAP00000013480
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX49,981,804 - 50,006,363 (+)Ensembl
RefSeq Acc Id: XM_003805957   ⟹   XP_003806005
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X49,851,475 - 50,013,375 (+)NCBI
Mhudiblu_PPA_v0X42,137,523 - 42,299,716 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003805958   ⟹   XP_003806006
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X49,851,472 - 50,013,375 (+)NCBI
Mhudiblu_PPA_v0X42,137,523 - 42,293,565 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003805959   ⟹   XP_003806007
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X49,981,804 - 50,013,375 (+)NCBI
Mhudiblu_PPA_v0X42,268,082 - 42,299,716 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003806005 (Get FASTA)   NCBI Sequence Viewer  
  XP_003806006 (Get FASTA)   NCBI Sequence Viewer  
  XP_003806007 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003806006   ⟸   XM_003805958
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003806005   ⟸   XM_003805957
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003806007   ⟸   XM_003805959
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000013480   ⟸   ENSPPAT00000036152
RefSeq Acc Id: ENSPPAP00000013471   ⟸   ENSPPAT00000036143
Protein Domains
CBS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029912 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000013471 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000013480 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036143 UniProtKB/TrEMBL
  ENSPPAT00000036152 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3080.10 UniProtKB/TrEMBL
InterPro CBS_dom UniProtKB/TrEMBL
  Cl-channel_core UniProtKB/TrEMBL
  Cl-channel_volt-gated UniProtKB/TrEMBL
  Cl_channel-5 UniProtKB/TrEMBL
KEGG Report pps:100974807 UniProtKB/TrEMBL
NCBI Gene CLCN5 ENTREZGENE
Pfam CBS UniProtKB/TrEMBL
  Voltage_CLC UniProtKB/TrEMBL
PRINTS CLCHANNEL UniProtKB/TrEMBL
  CLCHANNEL5 UniProtKB/TrEMBL
PROSITE CBS UniProtKB/TrEMBL
SMART CBS UniProtKB/TrEMBL
Superfamily-SCOP SSF81340 UniProtKB/TrEMBL
UniProt A0A2R9A9A7_PANPA UniProtKB/TrEMBL
  A0A2R9AD48_PANPA UniProtKB/TrEMBL