FAM200C (family with sequence similarity 200 member C) - Rat Genome Database

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Gene: FAM200C (family with sequence similarity 200 member C) Pan paniscus
Analyze
Symbol: FAM200C
Name: family with sequence similarity 200 member C
RGD ID: 11984130
Description: FOUND IN nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transposon-derived Buster3 transposase-like protein-like; ZBED8; zinc finger BED-type containing 8
RGD Orthologs
Human
Chinchilla
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,578,943 - 155,586,907 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,713,293 - 153,726,453 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,784,040 - 155,792,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,478,277 - 162,485,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,478,839 - 162,480,623 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
FAM200C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,578,943 - 155,586,907 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,713,293 - 153,726,453 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,784,040 - 155,792,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,478,277 - 162,485,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,478,839 - 162,480,623 (-)Ensemblpanpan1.1panPan2
FAM200C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385160,393,148 - 160,400,054 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5160,393,148 - 160,400,054 (-)EnsemblGRCh38hg38GRCh38
GRCh375159,820,155 - 159,827,061 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,752,733 - 159,759,638 (-)NCBINCBI36Build 36hg18NCBI36
Celera5155,852,618 - 155,859,521 (-)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,913,848 - 154,920,750 (-)NCBIHuRef
CHM1_15159,253,054 - 159,259,957 (-)NCBICHM1_1
T2T-CHM13v2.05160,921,640 - 160,928,543 (-)NCBIT2T-CHM13v2.0
Fam200c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540814,262,624 - 14,264,402 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540814,262,519 - 14,266,835 (-)NCBIChiLan1.0ChiLan1.0
FAM200C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,331,147 - 50,336,768 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl450,334,727 - 50,336,511 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha450,226,515 - 50,232,383 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0450,766,415 - 50,772,284 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl450,766,441 - 50,772,284 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,574,849 - 50,580,723 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0450,698,619 - 50,704,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0451,218,893 - 51,224,765 (+)NCBIUU_Cfam_GSD_1.0
FAM200C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,752,657 - 62,761,107 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2362,753,528 - 62,755,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603414,844,557 - 14,851,523 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam200c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,167,677 - 29,169,449 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473329,163,299 - 29,170,979 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000010101   ⟹   ENSPPAP00000002054
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5162,478,839 - 162,480,623 (-)Ensembl
RefSeq Acc Id: XM_003808023   ⟹   XP_003808071
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24155,578,943 - 155,586,907 (-)NCBI
NHGRI_mPanPan15153,713,293 - 153,726,453 (-)NCBI
Mhudiblu_PPA_v05155,784,040 - 155,792,152 (-)NCBI
PanPan1.15162,478,277 - 162,485,202 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003808071 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002054.1
Reference Protein Sequences
RefSeq Acc Id: XP_003808071   ⟸   XM_003808023
- UniProtKB: A0A2R8ZB30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000002054   ⟸   ENSPPAT00000010101


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000009361 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000010101.1 UniProtKB/TrEMBL
InterPro EPM2A-int_1/ZBED8-like UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
KEGG Report pps:100978960 UniProtKB/TrEMBL
NCBI Gene ZBED8 ENTREZGENE
PANTHER EPM2A-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  LOW QUALITY PROTEIN: ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 5-LIKE UniProtKB/TrEMBL
Superfamily-SCOP SSF53098 UniProtKB/TrEMBL
UniProt A0A2R8ZB30 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-03-14 FAM200C  family with sequence similarity 200 member C  ZBED8  family with sequence similarity 200 member C  Symbol and/or name change 5135510 APPROVED
2022-11-01 ZBED8  family with sequence similarity 200 member C  ZBED8  zinc finger BED-type containing 8  Symbol and/or name change 5135510 APPROVED