LOC100991966 (uncharacterized LOC100991966) - Rat Genome Database

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Gene: LOC100991966 (uncharacterized LOC100991966) Pan paniscus
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Symbol: LOC100991966 (Ensembl: UQCC5)
Name: uncharacterized LOC100991966 (Ensembl:ubiquinol-cytochrome c reductase complex assembly factor 5)
RGD ID: 11983476
Description: ENCODES a protein that exhibits mitochondrial ribosome binding (inferred); INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small integral membrane protein 4; SMIM4; uncharacterized protein LOC100991966
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,531,072 - 52,535,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,535,908 - 52,540,117 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,478,192 - 52,482,186 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,704,939 - 53,710,622 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,706,374 - 53,749,398 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC100991966
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,531,072 - 52,535,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,535,908 - 52,540,117 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,478,192 - 52,482,186 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,704,939 - 53,710,622 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,706,374 - 53,749,398 (+)Ensemblpanpan1.1panPan2
UQCC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,536,605 - 52,541,890 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,534,013 - 52,579,237 (+)EnsemblGRCh38hg38GRCh38
GRCh37352,570,621 - 52,575,906 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,543,954 - 52,549,863 (+)NCBINCBI36Build 36hg18NCBI36
Celera352,550,126 - 52,554,091 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,633,221 - 52,637,183 (+)NCBIHuRef
CHM1_1352,522,929 - 52,526,891 (+)NCBICHM1_1
T2T-CHM13v2.0352,567,702 - 52,574,786 (+)NCBIT2T-CHM13v2.0
Uqcc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,810,081 - 30,850,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,810,089 - 30,850,913 (-)EnsemblGRCm39 Ensembl
GRCm381431,088,127 - 31,128,930 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,088,132 - 31,128,956 (-)EnsemblGRCm38mm10GRCm38
MGSCv371431,937,691 - 31,942,116 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,953,514 - 29,957,933 (-)NCBIMGSCv36mm8
Celera1427,382,925 - 27,387,270 (-)NCBICelera
Cytogenetic Map14BNCBI
Uqcc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,323,071 - 6,326,911 (-)NCBIGRCr8
mRatBN7.2166,316,631 - 6,320,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,286,300 - 6,320,642 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,328,622 - 6,332,459 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,473,846 - 7,477,683 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,335,579 - 6,339,417 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,206,632 - 7,210,518 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0167,135,195 - 7,139,086 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,553,765 - 6,557,642 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,553,762 - 6,559,561 (-)NCBI
Celera168,868,939 - 8,872,824 (+)NCBICelera
Cytogenetic Map16p16NCBI
Smim4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049563131,988 - 5,240 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049563131,988 - 5,240 (+)NCBIChiLan1.0ChiLan1.0
UQCC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,234,675 - 37,238,450 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,228,887 - 37,238,746 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,216,641 - 37,220,412 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,584,265 - 37,588,036 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12036,948,834 - 36,952,601 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,357,437 - 37,361,208 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,635,691 - 37,639,458 (-)NCBIUU_Cfam_GSD_1.0
Smim4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,236,382 - 170,240,227 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,374,966 - 3,378,797 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,374,954 - 3,378,800 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,682,294 - 34,686,027 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,679,623 - 34,687,171 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,891,694 - 37,895,304 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,904,843 - 13,909,062 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,904,852 - 13,910,667 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041152,991,260 - 152,995,450 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,669,627 - 4,672,979 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,670,433 - 4,672,997 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063602694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000061425   ⟹   ENSPPAP00000038522
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl353,706,374 - 53,710,622 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000061427   ⟹   ENSPPAP00000038524
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl353,706,805 - 53,749,398 (+)Ensembl
RefSeq Acc Id: XM_063602694   ⟹   XP_063458764
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2252,531,072 - 52,535,345 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063458764 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000038522.1
  ENSPPAP00000038524.1
Ensembl Acc Id: ENSPPAP00000038522   ⟸   ENSPPAT00000061425
Ensembl Acc Id: ENSPPAP00000038524   ⟸   ENSPPAT00000061427
RefSeq Acc Id: XP_063458764   ⟸   XM_063602694


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041969 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061425.1 UniProtKB/TrEMBL
  ENSPPAT00000061427.1 UniProtKB/TrEMBL
InterPro UPF0640 UniProtKB/TrEMBL
NCBI Gene SMIM4 ENTREZGENE
PANTHER PTHR35250 UniProtKB/TrEMBL
  SMALL INTEGRAL MEMBRANE PROTEIN 4 UniProtKB/TrEMBL
Pfam UPF0640 UniProtKB/TrEMBL
UniProt A0A2R9C9J9_PANPA UniProtKB/TrEMBL
  A0A2R9CK07_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-02 LOC100991966  uncharacterized LOC100991966  SMIM4  small integral membrane protein 4  Symbol and/or name change 5135510 APPROVED