TCEAL6 (transcription elongation factor A like 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TCEAL6 (transcription elongation factor A like 6) Pan paniscus
Analyze
Symbol: TCEAL6
Name: transcription elongation factor A like 6
RGD ID: 11982844
Description: ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription elongation factor A (SII)-like 3; transcription elongation factor A protein-like 6
RGD Orthologs
Human
Mouse
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X101,743,995 - 101,745,937 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X101,747,600 - 101,749,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X91,346,889 - 91,348,832 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X101,474,673 - 101,475,987 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
TCEAL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X101,743,995 - 101,745,937 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X101,747,600 - 101,749,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X91,346,889 - 91,348,832 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X101,474,673 - 101,475,987 (-)NCBIpanpan1.1PanPan1.1panPan2
TCEAL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X102,138,502 - 102,142,481 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX102,140,476 - 102,142,970 (-)EnsemblGRCh38hg38GRCh38
GRCh37X101,393,474 - 101,397,453 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X101,281,589 - 101,284,044 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX101,915,493 - 101,917,948 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX91,203,050 - 91,205,484 (-)NCBIHuRef
CHM1_1X101,288,845 - 101,291,279 (-)NCBICHM1_1
T2T-CHM13v2.0X100,583,085 - 100,587,065 (-)NCBIT2T-CHM13v2.0
Tceal6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X134,109,435 - 134,111,436 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX134,109,436 - 134,111,436 (-)EnsemblGRCm39 Ensembl
GRCm38X135,208,686 - 135,210,687 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX135,208,687 - 135,210,687 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X131,743,225 - 131,745,226 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X130,555,051 - 130,557,051 (-)NCBIMGSCv36mm8
CeleraX118,785,764 - 118,787,682 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX56.7NCBI
TCEAL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X75,909,535 - 75,912,322 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX62,275,033 - 62,277,819 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X77,331,284 - 77,334,076 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X74,901,333 - 74,904,121 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X76,545,696 - 76,548,480 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X76,308,673 - 76,311,462 (-)NCBIUU_Cfam_GSD_1.0
TCEAL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X90,313,019 - 90,314,352 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX90,313,276 - 90,313,878 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606515,280,645 - 15,283,089 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tceal6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624902141,093 - 143,042 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624902141,091 - 143,075 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014343496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_014343496   ⟹   XP_014198982
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X101,743,995 - 101,745,937 (-)NCBI
NHGRI_mPanPan1X101,747,600 - 101,749,623 (-)NCBI
Mhudiblu_PPA_v0X91,346,889 - 91,348,832 (-)NCBI
PanPan1.1X101,474,673 - 101,475,987 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_014198982 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_014198982   ⟸   XM_014343496
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene TCEAL6 ENTREZGENE