ZNF335 (zinc finger protein 335) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ZNF335 (zinc finger protein 335) Pan paniscus
Analyze
Symbol: ZNF335
Name: zinc finger protein 335
RGD ID: 11980523
Description: ENCODES a protein that exhibits histone methyltransferase binding (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN brain morphogenesis (ortholog); cerebral cortex neuron differentiation (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Aminoacylase 1 Deficiency (ortholog); focal epilepsy (ortholog); genetic disease (ortholog); FOUND IN histone methyltransferase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,690,059 - 51,715,263 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,683,168 - 51,708,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,287,518 - 42,312,169 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,374,591 - 43,398,047 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,374,591 - 43,397,724 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF335
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,690,059 - 51,715,263 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,683,168 - 51,708,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,287,518 - 42,312,169 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,374,591 - 43,398,047 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,374,591 - 43,397,724 (-)Ensemblpanpan1.1panPan2
ZNF335
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,948,660 - 45,972,203 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,948,660 - 45,972,203 (-)EnsemblGRCh38hg38GRCh38
GRCh372044,577,299 - 44,600,842 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,010,699 - 44,034,240 (-)NCBINCBI36Build 36hg18NCBI36
Build 342044,010,699 - 44,034,240NCBI
Celera2041,288,749 - 41,312,289 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,318,761 - 41,342,313 (-)NCBIHuRef
CHM1_12044,479,949 - 44,503,488 (-)NCBICHM1_1
T2T-CHM13v2.02047,684,713 - 47,708,265 (-)NCBIT2T-CHM13v2.0
Zfp335
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,733,802 - 164,756,034 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,733,802 - 164,753,677 (-)EnsemblGRCm39 Ensembl
GRCm382164,891,882 - 164,912,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,891,882 - 164,911,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv372164,717,392 - 164,737,250 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362164,583,082 - 164,602,803 (-)NCBIMGSCv36mm8
Celera2170,829,139 - 170,848,989 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.27NCBI
Zfp335
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,046,789 - 174,073,076 (-)NCBIGRCr8
mRatBN7.23153,618,587 - 153,648,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,627,467 - 153,647,054 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,435,890 - 157,456,607 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,934,864 - 165,955,581 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,678,637 - 163,699,354 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,357,201 - 161,378,073 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,357,278 - 161,376,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,541,821 - 167,562,537 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,927,554 - 155,946,834 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,833,581 - 155,843,252 (-)NCBI
Celera3152,233,035 - 152,253,883 (-)NCBICelera
Cytogenetic Map3q42NCBI
Znf335
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,335,908 - 11,354,300 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544511,334,742 - 11,354,584 (+)NCBIChiLan1.0ChiLan1.0
ZNF335
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,226,636 - 33,246,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,226,688 - 33,245,901 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,742,053 - 32,773,553 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,925,508 - 33,957,030 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,932,926 - 33,956,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,183,793 - 33,215,282 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,299,106 - 33,330,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,838,088 - 33,869,585 (-)NCBIUU_Cfam_GSD_1.0
Znf335
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,617,975 - 191,636,823 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,072,554 - 7,090,183 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,070,030 - 7,090,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF335
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,132,404 - 48,153,181 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,132,531 - 48,153,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,772,532 - 53,792,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF335
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,912,892 - 17,937,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,914,387 - 17,937,313 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605066,548,789 - 66,573,289 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf335
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,625,150 - 8,647,441 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247908,624,316 - 8,646,712 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000062136   ⟹   ENSPPAP00000039226
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2043,374,591 - 43,397,724 (-)Ensembl
RefSeq Acc Id: XM_003825994   ⟹   XP_003826042
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,690,059 - 51,713,736 (-)NCBI
NHGRI_mPanPan12051,683,168 - 51,706,872 (-)NCBI
Mhudiblu_PPA_v02042,287,518 - 42,312,167 (-)NCBI
PanPan1.12043,374,591 - 43,398,047 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008951381   ⟹   XP_008949629
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,690,059 - 51,713,736 (-)NCBI
NHGRI_mPanPan12051,683,168 - 51,708,871 (-)NCBI
Mhudiblu_PPA_v02042,287,518 - 42,312,168 (-)NCBI
PanPan1.12043,374,591 - 43,398,047 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034947693   ⟹   XP_034803584
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,690,059 - 51,715,263 (-)NCBI
NHGRI_mPanPan12051,683,168 - 51,708,870 (-)NCBI
Mhudiblu_PPA_v02042,287,518 - 42,312,168 (-)NCBI
RefSeq Acc Id: XM_034947695   ⟹   XP_034803586
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,690,059 - 51,713,726 (-)NCBI
NHGRI_mPanPan12051,683,168 - 51,708,871 (-)NCBI
Mhudiblu_PPA_v02042,287,518 - 42,312,168 (-)NCBI
RefSeq Acc Id: XM_034947696   ⟹   XP_034803587
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,690,059 - 51,713,736 (-)NCBI
NHGRI_mPanPan12051,683,168 - 51,708,874 (-)NCBI
Mhudiblu_PPA_v02042,287,518 - 42,312,169 (-)NCBI
RefSeq Acc Id: XM_034947697   ⟹   XP_034803588
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,690,059 - 51,713,008 (-)NCBI
NHGRI_mPanPan12051,683,168 - 51,706,114 (-)NCBI
Mhudiblu_PPA_v02042,287,518 - 42,310,488 (-)NCBI
RefSeq Acc Id: XM_055105061   ⟹   XP_054961036
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22151,690,059 - 51,713,724 (-)NCBI
NHGRI_mPanPan12051,683,168 - 51,708,868 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008949629   ⟸   XM_008951381
- Peptide Label: isoform X6
- UniProtKB: A0A2R9CBC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003826042   ⟸   XM_003825994
- Peptide Label: isoform X4
- UniProtKB: A0A2R9CBC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034803587   ⟸   XM_034947696
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CBC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803586   ⟸   XM_034947695
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CBC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803584   ⟸   XM_034947693
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CBC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803588   ⟸   XM_034947697
- Peptide Label: isoform X7
RefSeq Acc Id: ENSPPAP00000039226   ⟸   ENSPPAT00000062136
RefSeq Acc Id: XP_054961036   ⟸   XM_055105061
- Peptide Label: isoform X5
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042291 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062136.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100972093 UniProtKB/TrEMBL
NCBI Gene ZNF335 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 335 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-H2C2_5 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9CBC3 ENTREZGENE, UniProtKB/TrEMBL