SSBP1 (single stranded DNA binding protein 1)

Gene: SSBP1 (single stranded DNA binding protein 1) Pan paniscus

Analyze

Symbol:

SSBP1

Name:

single stranded DNA binding protein 1

RGD ID:

11980052

Description:

ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); identical protein binding (inferred); INVOLVED IN mitochondrion organization (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); cone-rod dystrophy (ortholog); genetic disease (ortholog); FOUND IN mitochondrial nucleoid (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

single-stranded DNA-binding protein, mitochondrial

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	178,524,904 - 178,539,330 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	30,535,126 - 30,549,585 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	133,670,085 - 133,682,228 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	146,139,837 - 146,151,495 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	146,139,837 - 146,151,495 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Arsenic Poisoning (ISO)

cone-rod dystrophy (ISO)

genetic disease (ISO)

Hereditary Pancreatitis (ISO)

Optic Atrophy 13 (ISO)

RASopathy (ISO)

skin disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA replication (IEA)

DNA unwinding involved in DNA replication (IEA)

mitochondrial DNA replication (IEA)

mitochondrion organization (IEA,ISO)

positive regulation of mitochondrial DNA replication (IEA)

protein homotetramerization (IEA)

Cellular Component

mitochondrial nucleoid (IEA)

mitochondrion (IEA)

Molecular Function

chromatin binding (IEA)

DNA binding (IEA)

identical protein binding (IEA)

protein binding (ISO)

protein homodimerization activity (IEA)

single-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SSBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	178,524,904 - 178,539,330 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	30,535,126 - 30,549,585 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	133,670,085 - 133,682,228 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	146,139,837 - 146,151,495 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	146,139,837 - 146,151,495 (+)	Ensembl	panpan1.1		panPan2

SSBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	141,738,321 - 141,750,488 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	141,738,334 - 141,787,922 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	141,438,121 - 141,450,288 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	141,084,645 - 141,096,726 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	140,891,359 - 140,903,441	NCBI
Celera	7	136,159,808 - 136,171,889 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI
HuRef	7	135,734,891 - 135,746,970 (+)	NCBI		HuRef
CHM1_1	7	141,372,469 - 141,384,636 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	143,054,147 - 143,066,314 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	140,775,840 - 140,788,007 (+)	NCBI

Ssbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	40,448,302 - 40,458,757 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	40,448,286 - 40,461,634 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	40,471,414 - 40,481,823 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	40,471,352 - 40,484,700 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	40,421,414 - 40,431,822 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	40,401,022 - 40,411,430 (+)	NCBI		MGSCv36	mm8
Celera	6	40,458,830 - 40,469,238 (+)	NCBI		Celera
Cytogenetic Map	6	B1	NCBI
cM Map	6	18.82	NCBI

Ssbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	70,232,740 - 70,242,824 (+)	NCBI		GRCr8
mRatBN7.2	4	69,266,024 - 69,276,135 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	69,266,102 - 69,276,135 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	74,194,304 - 74,204,330 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	70,115,458 - 70,125,484 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	68,526,940 - 68,536,969 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	68,634,844 - 68,645,112 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	68,634,929 - 68,645,172 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	133,421,333 - 133,430,764 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	68,027,304 - 68,036,581 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	68,302,749 - 68,312,711 (+)	NCBI
Celera	4	64,269,091 - 64,279,111 (+)	NCBI		Celera
Cytogenetic Map	4	q23	NCBI

Ssbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955494	1,814,106 - 1,826,375 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955494	1,807,885 - 1,826,375 (-)	NCBI	ChiLan1.0	ChiLan1.0

SSBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	7,445,351 - 7,461,513 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	7,451,444 - 7,461,464 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	8,296,558 - 8,306,117 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	7,366,951 - 7,383,090 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	7,372,962 - 7,383,068 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	7,326,794 - 7,336,352 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	7,169,166 - 7,178,723 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	7,236,927 - 7,246,487 (-)	NCBI		UU_Cfam_GSD_1.0

Ssbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	13,579,280 - 13,608,032 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936592	5,614,619 - 5,619,627 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936592	5,611,775 - 5,620,846 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SSBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	8,151,029 - 8,167,983 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	8,084,292 - 8,167,983 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	8,443,269 - 8,460,494 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SSBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	110,492,340 - 110,504,176 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	110,492,377 - 110,504,177 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666072	7,170,863 - 7,182,714 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ssbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	21,746,794 - 21,761,258 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624765	21,746,633 - 21,771,234 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003813374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003813375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003813376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003813377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014345816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014345817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014345818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014345819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055115464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055115465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000046991 ⟹ ENSPPAP00000024166

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	146,139,837 - 146,151,495 (+)	Ensembl

RefSeq Acc Id:

XM_003813374 ⟹ XP_003813422

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,524,966 - 178,539,330 (+)	NCBI
NHGRI_mPanPan1	7	30,535,249 - 30,549,585 (+)	NCBI
Mhudiblu_PPA_v0	7	133,670,108 - 133,682,228 (+)	NCBI
PanPan1.1	7	146,139,837 - 146,151,495 (+)	NCBI

Sequence:

show sequence

TCCTTTTTCCTCTGGCGAGCTTTGCGTTCCCTGTGCGCCGGAAGTGATCCCCTGCGTGGCTGGG
CTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAGGGGATAGCCAGCGCGAAGGAAGTGCTGGAGT
CGTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTCTGTGAAAAGCCTAAAGA
TTAGACTGTAAGAAAAGAAAATAGAAGCCATGTTTCGAAGACCTGTATTACAGGTACTTCGTCA
GTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATCCCTGAATCGTGTG
CACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCA
CAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAACTGGG
TGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGTG
GCATATCAATATGTGAAAAAGGGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAAT
ACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGATAATATTATATTTCT
GAGTGACCAGACGAAAGAGAAGGAGTAGAAAGGATGATTCTTCTTTGGCCATCATTTGGTACAG
TCTCATTTCCAAGTCATGTATAATCTTTATGGCTTCCAAGGACAAGAATTAAAATACTCTTTTA
CGTAAAA

hide sequence

RefSeq Acc Id:

XM_003813375 ⟹ XP_003813423

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,524,966 - 178,539,330 (+)	NCBI
NHGRI_mPanPan1	7	30,535,249 - 30,549,585 (+)	NCBI
Mhudiblu_PPA_v0	7	133,670,085 - 133,682,228 (+)	NCBI
PanPan1.1	7	146,139,837 - 146,151,495 (+)	NCBI

Sequence:

show sequence

TCCTTTTTCCTCTGGCGAGCTTTGCGTTCCCTGTGCGCCGGAAGTGATCCCCTGCGTGGCTGGG
CTGCTCGGGTTAGATCGTCAGGAAAAGCCTAAAGATTAGACTGTAAGAAAAGAAAATAGAAGCC
ATGTTTCGAAGACCTGTATTACAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTA
CCAGTTTGGTTCTTGAAAGATCCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCC
TGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATG
TGGCGATCAGGGGACAGTGAAGTTTACCAACTGGGTGATGTCAGTCAAAAGACAACATGGCACA
GAATATCAGTATTCCGGCCAGGCCTCAGAGACGTGGCATATCAATATGTGAAAAAGGGGTCTCG
AATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAA
GCAACAACAATCATAGCTGATAATATTATATTTCTGAGTGACCAGACGAAAGAGAAGGAGTAGA
AAGGATGATTCTTCTTTGGCCATCATTTGGTACAGTCTCATTTCCAAGTCATGTATAATCTTTA
TGGCTTCCAAGGACAAGAATTAAAATACTCTTTTACGTAAAA

hide sequence

RefSeq Acc Id:

XM_003813376 ⟹ XP_003813424

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,524,966 - 178,539,330 (+)	NCBI
NHGRI_mPanPan1	7	30,535,249 - 30,549,585 (+)	NCBI
Mhudiblu_PPA_v0	7	133,670,108 - 133,682,228 (+)	NCBI
PanPan1.1	7	146,139,837 - 146,151,495 (+)	NCBI

Sequence:

show sequence

TCCTTTTTCCTCTGGCGAGCTTTGCGTTCCCTGTGCGCCGGAAGTGATCCCCTGCGTGGCTGGG
CTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAGGGGATAGCCAGCGCGAAGGAAGTGCTGGAGT
CGTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTCTGTGTAGGTGTCTGGCC
CTTTCATCAGTCGTGCGGAGGACCGCGTGATTTGCTTCCAGTTCTCCTCGGTTTTCAGGAAAAG
CCTAAAGATTAGACTGTAAGAAAAGAAAATAGAAGCCATGTTTCGAAGACCTGTATTACAGGTA
CTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATCCCTGA
ATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAA
TCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTAC
CAACTGGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCA
GAGACGTGGCATATCAATATGTGAAAAAGGGGTCTCGAATTTATTTGGAAGGGAAAATAGACTA
TGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGATAATATT
ATATTTCTGAGTGACCAGACGAAAGAGAAGGAGTAGAAAGGATGATTCTTCTTTGGCCATCATT
TGGTACAGTCTCATTTCCAAGTCATGTATAATCTTTATGGCTTCCAAGGACAAGAATTAAAATA
CTCTTTTACGTAAAA

hide sequence

RefSeq Acc Id:

XM_003813377 ⟹ XP_003813425

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,524,966 - 178,539,330 (+)	NCBI
NHGRI_mPanPan1	7	30,535,249 - 30,549,585 (+)	NCBI
Mhudiblu_PPA_v0	7	133,670,108 - 133,682,228 (+)	NCBI
PanPan1.1	7	146,139,837 - 146,151,495 (+)	NCBI

Sequence:

show sequence

TCCTTTTTCCTCTGGCGAGCTTTGCGTTCCCTGTGCGCCGGAAGTGATCCCCTGCGTGGCTGGG
CTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAGGGGATAGCCAGCGCGAAGGAAGTGCTGGAGT
CGTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTCTGTGTAGGTGTCTGGCC
CTTTCATCAGTCGTGCGGAGGACCGCGTGATTTGCTTCCAGTTCTCCTCGGTTTTCAGGTGGTG
GCGCCATCTTCGGAAAAGCCTAAAGATTAGACTGTAAGAAAAGAAAATAGAAGCCATGTTTCGA
AGACCTGTATTACAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGG
TTCTTGAAAGATCCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAG
ACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCA
GGGGACAGTGAAGTTTACCAACTGGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAG
TATTCCGGCCAGGCCTCAGAGACGTGGCATATCAATATGTGAAAAAGGGGTCTCGAATTTATTT
GGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACA
ATCATAGCTGATAATATTATATTTCTGAGTGACCAGACGAAAGAGAAGGAGTAGAAAGGATGAT
TCTTCTTTGGCCATCATTTGGTACAGTCTCATTTCCAAGTCATGTATAATCTTTATGGCTTCCA
AGGACAAGAATTAAAATACTCTTTTACGTAAAA

hide sequence

RefSeq Acc Id:

XM_014345816 ⟹ XP_014201302

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,524,904 - 178,535,934 (+)	NCBI
NHGRI_mPanPan1	7	30,535,126 - 30,544,780 (+)	NCBI
Mhudiblu_PPA_v0	7	133,670,085 - 133,677,426 (+)	NCBI
PanPan1.1	7	146,139,837 - 146,147,154 (+)	NCBI

Sequence:

show sequence

TCCTTTTTCCTCTGGCGAGCTTTGCGTTCCCTGTGCGCCGGAAGTGATCCCCTGCGTGGCTGGG
CTGCTCGGGTTAGATCGTCAGGAAAAGCCTAAAGATTAGACTGTAAGAAAAGAAAATAGAAGCC
ATGTTTCGAAGACCTGTATTACAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTA
CCAGTTTGGTTCTTGAAAGATCCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCC
TGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATG
TGGCGATCAGGGGACAGTGAAGTTTACCAACTGGGTGATGTCAGTCAAAAGACAACATGGCACA
GAATATCAGTATTCCGGCCAGGCCTCAGAGACGTGGCATATCAATATGTGAAAAAGGGGTCTCG
AATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAA
GCAACAACAATCATAGCTGGTAAGAAGCTTGTGAAAATAGCTGTTTTTTCTTTTTCTCCTTTTC
TTTTTTAAAAGCTTGGCTACACT

hide sequence

RefSeq Acc Id:

XM_014345817 ⟹ XP_014201303

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,527,264 - 178,535,934 (+)	NCBI
NHGRI_mPanPan1	7	30,537,518 - 30,544,780 (+)	NCBI
Mhudiblu_PPA_v0	7	133,670,164 - 133,677,426 (+)	NCBI
PanPan1.1	7	146,139,874 - 146,147,154 (+)	NCBI

Sequence:

show sequence

CCGGAAGTGATCCCCTGCGTGGCTGGGCTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAGGGGA
TAGCCAGCGCGAAGGAAGTGCTGGAGTCGTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGG
GAGGTGTTTCTGTGAAAAGCCTAAAGATTAGACTGTAAGAAAAGAAAATAGAAGCCATGTTTCG
AAGACCTGTATTACAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTG
GTTCTTGAAAGATCCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGA
GACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATC
AGGGGACAGTGAAGTTTACCAACTGGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCA
GTATTCCGGCCAGGCCTCAGAGACGTGGCATATCAATATGTGAAAAAGGGGTCTCGAATTTATT
TGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAAC
AATCATAGCTGGTAAGAAGCTTGTGAAAATAGCTGTTTTTTCTTTTTCTCCTTTTCTTTTTTAA
AAGCTTGGCTACACT

hide sequence

RefSeq Acc Id:

XM_014345818 ⟹ XP_014201304

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,527,276 - 178,535,934 (+)	NCBI
NHGRI_mPanPan1	7	30,537,531 - 30,544,780 (+)	NCBI
Mhudiblu_PPA_v0	7	133,670,205 - 133,677,426 (+)	NCBI
PanPan1.1	7	146,139,908 - 146,147,154 (+)	NCBI

Sequence:

show sequence

GGTTAGATCGTCAGGTGAGGGAGGAGGGGATAGCCAGCGCGAAGGAAGTGCTGGAGTCGTGTGT
TTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTCTGTGTAGGTGTCTGGCCCTTTCAT
CAGTCGTGCGGAGGACCGCGTGATTTGCTTCCAGTTCTCCTCGGTTTTCAGGAAAAGCCTAAAG
ATTAGACTGTAAGAAAAGAAAATAGAAGCCATGTTTCGAAGACCTGTATTACAGGTACTTCGTC
AGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATCCCTGAATCGTGT
GCACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTC
ACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAACTGG
GTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGT
GGCATATCAATATGTGAAAAAGGGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAA
TACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGGTAAGAAGCTTGTGA
AAATAGCTGTTTTTTCTTTTTCTCCTTTTCTTTTTTAAAAGCTTGGCTACACT

hide sequence

RefSeq Acc Id:

XM_014345819 ⟹ XP_014201305

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,527,317 - 178,535,934 (+)	NCBI
NHGRI_mPanPan1	7	30,537,592 - 30,544,780 (+)	NCBI
Mhudiblu_PPA_v0	7	133,670,229 - 133,677,426 (+)	NCBI
PanPan1.1	7	146,139,928 - 146,147,154 (+)	NCBI

Sequence:

show sequence

GAGGAGGGGATAGCCAGCGCGAAGGAAGTGCTGGAGTCGTGTGTTTTGGCTGCGCGTGATCCTG
CGTGGGTCGGGAGGTGTTTCTGTGTAGGTGTCTGGCCCTTTCATCAGTCGTGCGGAGGACCGCG
TGATTTGCTTCCAGTTCTCCTCGGTTTTCAGGTGGTGGCGCCATCTTCGGAAAAGCCTAAAGAT
TAGACTGTAAGAAAAGAAAATAGAAGCCATGTTTCGAAGACCTGTATTACAGGTACTTCGTCAG
TTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATCCCTGAATCGTGTGC
ACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCAC
AATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAACTGGGT
GATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGTGG
CATATCAATATGTGAAAAAGGGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATA
CATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGGTAAGAAGCTTGTGAAA
ATAGCTGTTTTTTCTTTTTCTCCTTTTCTTTTTTAAAAGCTTGGCTACACT

hide sequence

RefSeq Acc Id:

XM_055115464 ⟹ XP_054971439

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,527,452 - 178,539,330 (+)	NCBI
NHGRI_mPanPan1	7	30,537,718 - 30,549,585 (+)	NCBI

RefSeq Acc Id:

XM_055115465 ⟹ XP_054971440

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	178,527,447 - 178,539,330 (+)	NCBI
NHGRI_mPanPan1	7	30,537,702 - 30,549,585 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003813422	(Get FASTA)	NCBI Sequence Viewer
	XP_003813423	(Get FASTA)	NCBI Sequence Viewer
	XP_003813424	(Get FASTA)	NCBI Sequence Viewer
	XP_003813425	(Get FASTA)	NCBI Sequence Viewer
	XP_014201302	(Get FASTA)	NCBI Sequence Viewer
	XP_014201303	(Get FASTA)	NCBI Sequence Viewer
	XP_014201304	(Get FASTA)	NCBI Sequence Viewer
	XP_014201305	(Get FASTA)	NCBI Sequence Viewer
	XP_054971439	(Get FASTA)	NCBI Sequence Viewer
	XP_054971440	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000024166
	ENSPPAP00000024166.1

RefSeq Acc Id:	XP_014201302 ⟸ XM_014345816
- Peptide Label:	isoform X1
- Sequence:	show sequence MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEM WRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ ATTIIAGKKLVKIAVFSFSPFLF hide sequence

RefSeq Acc Id:	XP_003813425 ⟸ XM_003813377
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9B575 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEM WRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ ATTIIADNIIFLSDQTKEKE hide sequence

RefSeq Acc Id:	XP_003813424 ⟸ XM_003813376
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9B575 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEM WRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ ATTIIADNIIFLSDQTKEKE hide sequence

RefSeq Acc Id:	XP_003813422 ⟸ XM_003813374
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9B575 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEM WRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ ATTIIADNIIFLSDQTKEKE hide sequence

RefSeq Acc Id:	XP_003813423 ⟸ XM_003813375
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9B575 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEM WRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ ATTIIADNIIFLSDQTKEKE hide sequence

RefSeq Acc Id:	XP_014201303 ⟸ XM_014345817
- Peptide Label:	isoform X1
- Sequence:	show sequence MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEM WRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ ATTIIAGKKLVKIAVFSFSPFLF hide sequence

RefSeq Acc Id:	XP_014201304 ⟸ XM_014345818
- Peptide Label:	isoform X1
- Sequence:	show sequence MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEM WRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ ATTIIAGKKLVKIAVFSFSPFLF hide sequence

RefSeq Acc Id:	XP_014201305 ⟸ XM_014345819
- Peptide Label:	isoform X1
- Sequence:	show sequence MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEM WRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ ATTIIAGKKLVKIAVFSFSPFLF hide sequence

RefSeq Acc Id:

ENSPPAP00000024166 ⟸ ENSPPAT00000046991

RefSeq Acc Id:	XP_054971440 ⟸ XM_055115465
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9B575 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054971439 ⟸ XM_055115464
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9B575 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000035223	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000046991.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/TrEMBL
InterPro	NA-bd_OB-fold	UniProtKB/TrEMBL
	Primosome_PriB/ssb	UniProtKB/TrEMBL
	ssDNA-bd	UniProtKB/TrEMBL
KEGG Report	pps:100994242	UniProtKB/TrEMBL
NCBI Gene	SSBP1	ENTREZGENE
PANTHER	PTHR10302	UniProtKB/TrEMBL
	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	UniProtKB/TrEMBL
Pfam	SSB	UniProtKB/TrEMBL
PIRSF	SSB	UniProtKB/TrEMBL
PROSITE	SSB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/TrEMBL
UniProt	A0A2R9B575	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM