YPEL4 (yippee like 4) - Rat Genome Database

Name: YPEL4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: YPEL4 (yippee like 4) Pan paniscus

Analyze

Symbol:

YPEL4

Name:

yippee like 4

RGD ID:

11974260

Description:

INVOLVED IN negative regulation of erythrocyte clearance (ortholog); negative regulation of erythrocyte differentiation (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YPEL4 (yippee like 4)	NCBI	Ortholog
Mus musculus (house mouse):	Ypel4 (yippee like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ypel4 (yippee-like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ypel4 (yippee like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YPEL4 (yippee like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ypel4 (yippee like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YPEL4 (yippee like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	YPEL4 (yippee like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ypel4 (yippee like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	58,801,465 - 58,806,316 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	59,821,425 - 59,826,276 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	52,885,902 - 52,890,753 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	56,356,813 - 56,361,669 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	56,356,813 - 56,360,002 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of erythrocyte clearance (ISO)

negative regulation of erythrocyte differentiation (ISO)

protein localization to plasma membrane (ISO)

regulation of cell shape (ISO)

Cellular Component

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

YPEL4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	58,801,465 - 58,806,316 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	59,821,425 - 59,826,276 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	52,885,902 - 52,890,753 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	56,356,813 - 56,361,669 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	56,356,813 - 56,360,002 (-)	Ensembl	panpan1.1		panPan2

YPEL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	57,645,087 - 57,649,912 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	57,645,087 - 57,649,944 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	57,412,560 - 57,417,385 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	57,169,137 - 57,173,993 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	57,169,136 - 57,173,993	NCBI
Celera	11	54,769,044 - 54,773,901 (-)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	53,761,307 - 53,766,337 (-)	NCBI		HuRef
CHM1_1	11	57,278,768 - 57,283,625 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	57,595,261 - 57,603,883 (-)	NCBI		T2T-CHM13v2.0

Ypel4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	84,564,355 - 84,568,999 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	84,564,402 - 84,568,999 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	84,734,011 - 84,738,655 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	84,734,058 - 84,738,655 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	84,574,361 - 84,578,034 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	84,535,043 - 84,538,716 (+)	NCBI		MGSCv36	mm8
Celera	2	86,329,399 - 86,333,068 (+)	NCBI		Celera
Cytogenetic Map	2	D	NCBI
cM Map	2	49.45	NCBI

Ypel4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	90,222,060 - 90,227,395 (+)	NCBI		GRCr8
mRatBN7.2	3	69,815,373 - 69,820,708 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	69,816,175 - 69,820,707 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	73,197,978 - 73,202,512 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	81,796,640 - 81,801,174 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	79,555,560 - 79,560,084 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	72,134,719 - 72,139,204 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	72,134,731 - 72,141,035 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	78,655,360 - 78,659,864 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	67,945,706 - 67,947,569 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	69,171,695 - 69,176,228 (+)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

Ypel4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	2,580,518 - 2,588,753 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955511	2,580,518 - 2,588,753 (-)	NCBI	ChiLan1.0	ChiLan1.0

YPEL4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	38,535,792 - 38,541,183 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	38,539,190 - 38,540,303 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	38,082,881 - 38,087,589 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	39,218,290 - 39,222,997 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	39,218,398 - 39,222,681 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	38,801,383 - 38,806,089 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	38,374,404 - 38,379,112 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	39,005,150 - 39,009,857 (+)	NCBI		UU_Cfam_GSD_1.0

Ypel4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	14,763,521 - 14,768,524 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	4,877,332 - 4,883,364 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	4,877,357 - 4,882,346 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YPEL4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	13,289,402 - 13,294,233 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	13,289,369 - 13,294,245 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	12,922,576 - 12,927,430 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YPEL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	15,579,397 - 15,584,988 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	15,579,766 - 15,587,655 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	112,931,259 - 112,936,099 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ypel4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624864	3,067,183 - 3,074,668 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624864	3,067,184 - 3,074,668 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008951832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057299150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000041285 ⟹ ENSPPAP00000018552

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	56,356,813 - 56,360,002 (-)	Ensembl

RefSeq Acc Id:

XM_008951832 ⟹ XP_008950080

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	58,801,465 - 58,806,316 (-)	NCBI
NHGRI_mPanPan1	11	59,821,425 - 59,826,276 (-)	NCBI
Mhudiblu_PPA_v0	11	52,885,902 - 52,890,753 (-)	NCBI
PanPan1.1	11	56,356,813 - 56,361,669 (-)	NCBI

Sequence:

show sequence

AGTGTTATGATGCAGTTCCACAACACACAGCCACATTCACCCACAGACCGAGGTACAGAACGAG
AGACAACCTCTGCCCCCCCAGCAGCTGGCCAGCTTTGCAGCCCCAGTCTTGAGCCCCCAACTAC
CCTCCCCCCACCCACCCCCATCCCCTTCCCAATTGAAGGAGCGGAAAGAGAAGAGAGAAGAGTG
AGCAGAGAGATTGAGAGATTGAGAGAGAGAGAGAGAGATAGACGGAGATCTCTGGAGCAGACCT
CAAGGTGACTTCTATTTCTATCTGGTTCTCGTCTGGGGGGGCCCTGGCCGGGCAGCCCCCCAAC
ACTTCTCCTGCCCTGAAACACGGCTCTAGCCAACCTGCTCCGCTGCTTCACCTGCGACCGTCTC
TGCGGGGGCTGCACGGCGCCAGCCCCTCCAGCCCGCCAGGGCATTGTCCTCCAGCCCGTCATGC
CCAGCTGTGACCCCGGTCCGGGCCCTGCCTGCCTCCCCACCAAGACTTTCCGCAGCTATCTGCC
CCGCTGTCACCGCACTTACAGCTGTGTCCACTGCCGTGCACACCTGGCCAAACACGATGAGCTT
ATTTCCAAGTCCTTCCAAGGGAGCCATGGCCGAGCCTACCTGTTTAACTCCGTGGTCAACGTGG
GTTGCGGGCCAGCTGAACAGCGCCTCTTGCTCACGGGGCTCCACTCGGTAGCTGACATTTTCTG
TGAGAGCTGCAAAACCACACTGGGCTGGAAATATGAACAAGCTTTTGAGACGAGCCAGAAGTAC
AAGGAAGGGAAATACATCATTGAAATGTCACACATGGTGAAGGACAACGGCTGGGACTGAGGGG
CTCAGGCAGGGTGTGCCCTTCCTCCGCATGCCCCTCCCTCCCCACGGCCCTGCCAAGCAGTCTA
TACCAGCATGAGTACTGCCCCACCCCTGGGGGAAACCTGGCTCCAACCAACCCCTCCCCTGCCT
CCACCATATCCACTACCAGGCACCCTTTGGAACAGGGGTCTGGGGGTACCCCAGGGGTGTTAAG
GCTCAGGAGTGGGCAGCAGTCAGGGAGAGACAGAACTGGGGGAAAGGGATGGTTGTGGGTCTTT
CTGTTCCCAAGATCCTGAACATGGAGGCGATGGCAGGGCGTAGACTCAGGCAGAGAGGATTGTG
GGAGGAATCCGTTTTTGCTCCACCTCTTTTTGAGTGAACAGAGGACAAACCTTGGGTCACAGGG
CAAGTAGATCGTGGACCACAGAACAGCAGATGAGAAAAGGCTTGGGTTGGAGTGAAATTCTGGT
CTCAGACACCAGGAGACCAGAGTCTCTGAGGATGAAGTTTCCTACCCCTATTTGTAGGGAAAAG
GACTTGAGTGCAGGGAAAACTCAAATCCCAGGCCCTGGGAAATAGTAAAGTAATCAAAGGGTTT
TCCATTTCACTCCACTTGTTAGTTTATCTTGGCACTGAAGAGGCACTTTCGAGTATTTAACTTT
TGCCATTGGGTGGGGTGGGGACAGCTGCTCGCGGAACAGCCTCTAGTCGGCTGCTTCCAGAGTA
AGCAGTCTTTATGGGCTTTCTCTGAGGCCCAGTCACTGCTCCTGGGACCCAGTCCCCTGGAAGG
GAGGTGGAAAATCAGTGCTACGGGGCCAGTCTTTCCCGTGGCTGCCACCAGCGAATGAAACTTT
TGTATGATACATAAAGTGCTTGAGTCTATTTTTAATAAAAAGGGAAAAAGCAACTTGA

hide sequence

RefSeq Acc Id:

XM_057299150 ⟹ XP_057155133

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	58,801,465 - 58,806,290 (-)	NCBI
NHGRI_mPanPan1	11	59,821,425 - 59,826,250 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008950080	(Get FASTA)	NCBI Sequence Viewer
	XP_057155133	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000018552.1

RefSeq Acc Id:	XP_008950080 ⟸ XM_008951832
- UniProtKB:	A0A2R9AMH0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPSCDPGPGPACLPTKTFRSYLPRCHRTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVN VGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGWD hide sequence

RefSeq Acc Id:

ENSPPAP00000018552 ⟸ ENSPPAT00000041285

RefSeq Acc Id:	XP_057155133 ⟸ XM_057299150
- UniProtKB:	A0A2R9AMH0 (UniProtKB/TrEMBL)

Protein Domains

Yippee

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000032424	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000041285.1	UniProtKB/TrEMBL
InterPro	Yippee	UniProtKB/TrEMBL
	Yippee/Mis18/Cereblon	UniProtKB/TrEMBL
	Yippee_fam	UniProtKB/TrEMBL
KEGG Report	pps:100994447	UniProtKB/TrEMBL
NCBI Gene	YPEL4	ENTREZGENE
PANTHER	PROTEIN YIPPEE-LIKE 4	UniProtKB/TrEMBL
	PTHR13848	UniProtKB/TrEMBL
Pfam	Yippee-Mis18	UniProtKB/TrEMBL
PROSITE	YIPPEE	UniProtKB/TrEMBL
UniProt	A0A2R9AMH0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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