PABPC5 (poly(A) binding protein cytoplasmic 5) - Rat Genome Database

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Gene: PABPC5 (poly(A) binding protein cytoplasmic 5) Pan paniscus
Analyze
Symbol: PABPC5
Name: poly(A) binding protein cytoplasmic 5
RGD ID: 11973935
Description: ENCODES a protein that exhibits mRNA 3'-UTR binding (inferred); nucleic acid binding (inferred); poly(A) binding (inferred); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 9 (ortholog); genetic disease (ortholog); FOUND IN cytosol (inferred); nucleus (inferred); ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polyadenylate-binding protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X91,012,326 - 91,015,349 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X91,015,931 - 91,023,650 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X80,625,721 - 80,633,345 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X90,797,014 - 90,801,001 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX90,797,994 - 90,799,142 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PABPC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X91,012,326 - 91,015,349 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X91,015,931 - 91,023,650 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X80,625,721 - 80,633,345 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X90,797,014 - 90,801,001 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX90,797,994 - 90,799,142 (+)Ensemblpanpan1.1panPan2
PABPC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X91,434,839 - 91,438,584 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX91,434,595 - 91,438,584 (+)EnsemblGRCh38hg38GRCh38
GRCh37X90,689,838 - 90,693,583 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X90,576,253 - 90,580,239 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X90,495,741 - 90,499,727NCBI
CeleraX91,182,192 - 91,186,295 (+)NCBICelera
Cytogenetic MapXq21.31NCBI
HuRefY2,355,075 - 2,359,061 (+)NCBIHuRef
CHM1_1X90,582,274 - 90,586,260 (+)NCBICHM1_1
T2T-CHM13v2.0X89,886,956 - 89,890,701 (+)NCBIT2T-CHM13v2.0
Pabpc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X118,836,893 - 118,839,862 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX118,836,893 - 118,839,862 (+)EnsemblGRCm39 Ensembl
GRCm38X119,927,196 - 119,930,165 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX119,927,196 - 119,930,165 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X117,040,805 - 117,043,774 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X116,044,140 - 116,047,109 (+)NCBIMGSCv36mm8
CeleraX106,515,330 - 106,518,299 (+)NCBICelera
Cytogenetic MapXE1NCBI
cM MapX49.58NCBI
Pabpc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X89,858,502 - 89,862,454 (+)NCBIGRCr8
mRatBN7.2X85,637,763 - 85,641,235 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX85,638,574 - 85,639,722 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX87,294,548 - 87,295,696 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X90,728,025 - 90,729,173 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X88,285,824 - 88,286,972 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X92,130,292 - 92,133,756 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX92,131,209 - 92,132,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X92,037,490 - 92,038,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X109,402,246 - 109,404,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX86,791,881 - 86,793,029 (+)NCBICelera
Cytogenetic MapXq31NCBI
Pabpc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555252,847,458 - 2,849,836 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555252,847,458 - 2,849,836 (-)NCBIChiLan1.0ChiLan1.0
PABPC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X68,490,296 - 68,508,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX59,266,158 - 59,286,391 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X69,831,333 - 69,851,587 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX69,831,472 - 69,835,153 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X67,472,369 - 67,492,938 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X69,114,270 - 69,134,528 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X68,708,118 - 68,728,370 (+)NCBIUU_Cfam_GSD_1.0
Pabpc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X71,870,352 - 71,877,674 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366492,195,918 - 2,201,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100518351
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX74,142,566 - 74,145,719 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X74,141,707 - 74,145,941 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X95,053,194 - 95,056,290 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PABPC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X80,112,990 - 80,117,003 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX80,113,979 - 80,115,124 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666067593,301 - 600,503 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pabpc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249112,722,619 - 2,725,593 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000007970   ⟹   ENSPPAP00000001627
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX90,797,994 - 90,799,142 (+)Ensembl
RefSeq Acc Id: XM_003810371   ⟹   XP_003810419
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X91,012,326 - 91,015,349 (+)NCBI
NHGRI_mPanPan1X91,015,931 - 91,023,650 (+)NCBI
Mhudiblu_PPA_v0X80,625,721 - 80,633,345 (+)NCBI
PanPan1.1X90,797,014 - 90,801,001 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810419 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001627
  ENSPPAP00000001627.1
Reference Protein Sequences
RefSeq Acc Id: XP_003810419   ⟸   XM_003810371
- UniProtKB: A0A2R8ZDJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000001627   ⟸   ENSPPAT00000007970
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000007378 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000007970.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PABP_1234 UniProtKB/TrEMBL
  PABP_RRM1 UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM2_I_PABPs UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/TrEMBL
KEGG Report pps:100976307 UniProtKB/TrEMBL
NCBI Gene PABPC5 ENTREZGENE
PANTHER POLYADENYLATE-BINDING PROTEIN 5 UniProtKB/TrEMBL
  RNA BINDING PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2R8ZDJ8 ENTREZGENE, UniProtKB/TrEMBL