XYLT1 (xylosyltransferase 1) - Rat Genome Database

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Gene: XYLT1 (xylosyltransferase 1) Pan paniscus
Analyze
Symbol: XYLT1
Name: xylosyltransferase 1
RGD ID: 11972782
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); metal ion binding (inferred); protein xylosyltransferase activity (inferred); INVOLVED IN cellular response to heat (ortholog); embryonic skeletal system development (ortholog); glycosaminoglycan biosynthetic process (ortholog); ASSOCIATED WITH Desbuquois dysplasia (ortholog); Desbuquois Dysplasia 1 (ortholog); Desbuquois Dysplasia 2 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi cis cisterna (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21818,222,303 - 18,591,534 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11622,835,498 - 23,204,739 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01620,078,904 - 20,447,268 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11617,216,072 - 17,480,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1617,222,447 - 17,470,818 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
XYLT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21818,222,303 - 18,591,534 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11622,835,498 - 23,204,739 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01620,078,904 - 20,447,268 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11617,216,072 - 17,480,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1617,222,447 - 17,470,818 (-)Ensemblpanpan1.1panPan2
XYLT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381617,101,769 - 17,470,960 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1617,101,769 - 17,470,960 (-)EnsemblGRCh38hg38GRCh38
GRCh371617,195,626 - 17,564,817 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361617,103,682 - 17,472,239 (-)NCBINCBI36Build 36hg18NCBI36
Build 341617,108,839 - 17,472,239NCBI
Celera1616,738,145 - 17,106,289 (-)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1616,198,445 - 16,453,510 (-)NCBIHuRef
CHM1_11617,283,444 - 17,652,050 (-)NCBICHM1_1
T2T-CHM13v2.01617,108,779 - 17,478,203 (-)NCBIT2T-CHM13v2.0
Xylt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397116,980,214 - 117,266,853 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7116,980,214 - 117,272,803 (+)EnsemblGRCm39 Ensembl
GRCm387117,380,979 - 117,667,630 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7117,380,979 - 117,673,580 (+)EnsemblGRCm38mm10GRCm38
MGSCv377124,524,493 - 124,811,144 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367117,172,128 - 117,458,779 (+)NCBIMGSCv36mm8
MGSCv367107,018,054 - 107,306,726 (+)NCBIMGSCv36mm8
Celera7117,414,249 - 117,605,639 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map762.93NCBI
Xylt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81181,078,222 - 181,361,047 (+)NCBIGRCr8
mRatBN7.21171,643,925 - 171,929,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1171,643,925 - 171,926,783 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1179,953,621 - 180,236,961 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01187,139,927 - 187,423,261 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01179,864,825 - 180,152,899 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,939,698 - 187,264,758 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,149,453 - 187,261,632 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01193,935,737 - 194,218,543 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41175,673,299 - 175,802,134 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11175,826,610 - 175,941,380 (+)NCBI
Celera1169,443,427 - 169,724,035 (+)NCBICelera
Cytogenetic Map1q35NCBI
Xylt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554421,745,924 - 2,036,340 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554421,787,338 - 2,042,523 (+)NCBIChiLan1.0ChiLan1.0
XYLT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1626,742,853 - 27,041,666 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl626,742,853 - 27,041,666 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha628,109,084 - 28,409,448 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0626,902,243 - 27,205,813 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl626,904,311 - 27,206,135 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1626,702,907 - 27,003,220 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0626,598,683 - 26,899,086 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0626,993,079 - 27,297,436 (-)NCBIUU_Cfam_GSD_1.0
Xylt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344116,089,001 - 116,250,901 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365014,187,213 - 4,331,783 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365014,164,714 - 4,337,604 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XYLT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl327,158,878 - 27,492,762 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1327,158,438 - 27,492,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2327,756,168 - 27,960,491 (-)NCBISscrofa10.2Sscrofa10.2susScr3
XYLT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1516,197,982 - 16,566,893 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606813,399,882 - 13,778,851 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xylt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247821,462,916 - 1,757,206 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247821,462,888 - 1,763,267 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000042501   ⟹   ENSPPAP00000019727
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1617,222,447 - 17,470,818 (-)Ensembl
RefSeq Acc Id: XM_034939970   ⟹   XP_034795861
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21818,222,303 - 18,591,534 (-)NCBI
NHGRI_mPanPan11622,835,498 - 23,204,739 (+)NCBI
Mhudiblu_PPA_v01620,078,904 - 20,447,268 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034795861 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019727.1
Reference Protein Sequences
RefSeq Acc Id: XP_034795861   ⟸   XM_034939970
RefSeq Acc Id: ENSPPAP00000019727   ⟸   ENSPPAT00000042501
Protein Domains
Xylosyltransferase C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033089 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042501.1 UniProtKB/TrEMBL
InterPro Glyco_trans_14 UniProtKB/TrEMBL
  XYLT UniProtKB/TrEMBL
  XylT_C UniProtKB/TrEMBL
NCBI Gene XYLT1 ENTREZGENE
PANTHER PTHR46025 UniProtKB/TrEMBL
  PTHR46025:SF2 UniProtKB/TrEMBL
Pfam Branch UniProtKB/TrEMBL
  Xylo_C UniProtKB/TrEMBL
UniProt A0A2R9AQV0_PANPA UniProtKB/TrEMBL