LOC100992193 (protein S100-A7) - Rat Genome Database

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Gene: LOC100992193 (protein S100-A7) Pan paniscus
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Symbol: LOC100992193 (Ensembl: S100A7)
Name: protein S100-A7 (Ensembl:S100 calcium binding protein A7)
RGD ID: 11970459
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); metal ion binding (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (inferred); positive regulation of ERK1 and ERK2 cascade (inferred); positive regulation of granulocyte chemotaxis (inferred); FOUND IN collagen-containing extracellular matrix (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: S100 calcium binding protein A7; S100A7
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,328,140 - 96,376,408 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,063,371 - 96,111,639 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,812,685 - 128,813,961 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,441,911 - 132,444,820 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,436,200 - 132,444,820 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034936013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000062778   ⟹   ENSPPAP00000039866
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1132,436,200 - 132,444,820 (-)Ensembl
RefSeq Acc Id: XM_034936013   ⟹   XP_034791904
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2196,328,140 - 96,376,408 (+)NCBI
NHGRI_mPanPan1196,063,371 - 96,111,639 (+)NCBI
Mhudiblu_PPA_v01128,812,685 - 128,813,961 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034791904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000039866.1
RefSeq Acc Id: XP_034791904   ⟸   XM_034936013
- UniProtKB: A0A2R9CD46 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000039866   ⟸   ENSPPAT00000062778
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042606 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062778.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S-100_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
NCBI Gene LOC100992193 ENTREZGENE
PANTHER PTHR11639:SF128 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A2R9CD46 ENTREZGENE, UniProtKB/TrEMBL