| Gene: RTL5 (retrotransposon Gag like 5) Pan paniscus |
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Analyze |
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| Symbol: |
RTL5 |
| Name: |
retrotransposon Gag like 5 |
| RGD ID: |
11968998 |
| Description: |
ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
retrotransposon gag domain containing 4; retrotransposon gag domain-containing protein 4; retrotransposon Gag-like protein 5; RGAG4 |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly |
| Position: |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | X | 71,800,871 - 71,805,669 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | X | 71,804,477 - 71,809,265 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | X | 61,364,212 - 61,368,881 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | X | 71,449,115 - 71,453,685 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
RTL5
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | X | 71,800,871 - 71,805,669 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | X | 71,804,477 - 71,809,265 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | X | 61,364,212 - 61,368,881 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | X | 71,449,115 - 71,453,685 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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RTL5
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | X | 72,127,110 - 72,131,915 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 72,127,110 - 72,131,915 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | X | 71,346,960 - 71,351,765 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | X | 71,263,688 - 71,268,476 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | X | 71,129,983 - 71,134,772 | NCBI | | | | | Celera | X | 71,691,161 - 71,695,444 (-) | NCBI | | Celera | | | Cytogenetic Map | X | q13.1 | NCBI | | | | | HuRef | X | 65,102,402 - 65,106,955 (-) | NCBI | | HuRef | | | CHM1_1 | X | 71,239,104 - 71,243,895 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 70,560,716 - 70,565,521 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Rtl5
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | X | 101,110,148 - 101,114,942 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | X | 101,110,150 - 101,114,910 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | X | 102,066,542 - 102,071,307 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | X | 102,066,544 - 102,071,304 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | X | 99,261,881 - 99,266,646 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | X | 98,269,270 - 98,273,915 (-) | NCBI | | MGSCv36 | mm8 | | Celera | X | 88,978,489 - 88,983,256 (-) | NCBI | | Celera | | | Cytogenetic Map | X | D | NCBI | | | | | cM Map | X | 45.06 | NCBI | | | | |
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Rtl5
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | X | 71,223,914 - 71,228,713 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | X | 67,183,948 - 67,188,747 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | X | 67,184,154 - 67,188,809 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | X | 68,667,297 - 68,672,096 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | X | 72,167,536 - 72,172,335 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | X | 69,728,648 - 69,733,447 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | X | 71,956,446 - 71,961,013 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | X | 71,958,765 - 71,960,567 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | X | 72,802,668 - 72,805,900 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | X | 67,538,030 - 67,542,597 (-) | NCBI | | Celera | | | Cytogenetic Map | X | q22 | NCBI | | | | |
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Rtl5
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955475 | 11,499,717 - 11,504,438 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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RTL5
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | X | 56,179,992 - 56,184,621 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | X | 47,006,287 - 47,010,828 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | X | 57,233,896 - 57,238,438 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | X | 57,236,637 - 57,238,370 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | X | 55,142,587 - 55,147,123 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | X | 56,552,598 - 56,557,132 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | X | 56,395,109 - 56,399,645 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Rtl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RTL5
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | X | 58,010,839 - 58,012,533 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | X | 58,008,195 - 58,012,965 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | X | 65,724,400 - 65,726,902 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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RTL5
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | X | 61,932,740 - 61,937,684 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | X | 61,935,471 - 61,937,171 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666065 | 3,784,477 - 3,789,231 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Rtl5
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
XM_003805263 ⟹ XP_003805311 |
| Type: |
CODING |
| Position: |
| Bonobo Assembly | Chr | Position (strand) | Source |
|---|
NHGRI_mPanPan1-v2 | X | 71,800,871 - 71,805,669 (-) | NCBI | NHGRI_mPanPan1 | X | 71,804,477 - 71,809,265 (-) | NCBI | Mhudiblu_PPA_v0 | X | 61,364,212 - 61,368,881 (-) | NCBI | PanPan1.1 | X | 71,449,115 - 71,453,685 (-) | NCBI |
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| Sequence: |
AGCTCGCCCCGGTGGGTGTGGCCCGGCCTGTCCCGTGCCCCGCCGCCGCACTTCGGTCCCTCCC
GAGCCCCGCCGCCGCATTTCGGCCTCCTCCGGCCGCCCGTAGCTCCAGTTCCCCTTTCCCCACC
ACGGAGCCCCAGGGCCCCTGGGCTTGTCGAGATGTCTGAGGCGTCAGGAAATCTCAACAGCCTC
CGCATGGCGAATGTGGCCCTGCGCGAAGAATTAAATGCCCTTCGCGGGGAGAATGCCAATTTGG
GCCTCCAGCTCGGGAGAGCCCTGGCCGAGGTTAATTCCTTGCGGGGCAATGTCTCCAGCTACAT
CCGCTGGCCAGTACCCATAGTGCCCGTCCTTGCGGAGGAGAACTTGGAGTTCGCGCTCAGTGAG
ATCGAAGCCATTCCCGGGGGAGAACTGCCCTTCTTGTGCCGGCCTCCCCCACGCGCGGAGCCCG
ACTGTATCTCGGATGATCTTTTGATTAACGTGATCCAGGATCGCAGCACCCCCGACGGGCCCGC
TGACCCCCCTCTGCTGCCCATCCCGCCCCCGCCGGCGCTGCCTCCGCCCGCGTCAAAGGAACCG
CCCCCGCAACCCCCTCTGGCACCGCTGGAGTGGCCTGAGATAGAGCCCTTTTCAGGAGACCCAG
TCTACCTGGCTGAATTCCTGATGCAGCTAGAGACCTTCATAGCCGACCATGAGGATCATTTCCC
CGGGGGCGCCGAGCGGGTGGCCTTTCTGATCTCCTTTTTCACTGGCGAAGCCAAGGACTGGGCC
ATCTCGGTCACCCAGGAAGGAAGCCCCTTGCATGCCAACTTCCCGCGCTTCCTGGATGAAATCC
GTAAGGAATTCTGTGGCCCCATCCCCCCACGTGTGGCTAAAAAGGCCATTCGCAAGCTCAAGCA
GGGCCACTGTACCCTCGGCAGCTATGCAGATGCTTTTCAGTTCCTGGCCCAATTCTTGTCTTGG
GATGACTGCCGCCTCCAAAACCAATTCCTCAAAGGCCTGTCGGAATTCTTCCGCAAAGAGCTCT
TATGGTCAACAGAAATGGCCGACTTGGATGAGCTGATTCTCGAATGTGTGGAGATAGAAAGAAA
AGTGCGCGTTCCCAAGCCTATCCCGCTCCCTGGAGTTCGAAATATCATCTTCCCTTTTGCTCCG
AGTCCCAATGAGGAAGAAAGTGAAGATGAAGAGTACTACAGTGAAGATGAAGACCAAGAGGCAC
GCAGGCACAGGCTTCACTCCAAGGACCAGAGGAAGCGCATGAGGGCTTTTCAGCAAGAGATGAA
GGAGAAGGAGGAGGAGGAGATGAAGAAGGAGGAAGAAATGAAGAAGAAGGAAGAGAAGGAGGAG
GAGGAGGAAGAGGAAATGAAACAGAAAGAGGAGGAGGAGGAGATAAGGAACAAGAATGAGGAGG
AAGGAGAGAGTAAGGATGAAGAAGATGAAGATGAGGATGGGGGCCAGAAACCAGAAGGAGAGCC
ACAGCAGGATCCAGGGACTGAGGAGACCTATGGTGAGGTGGAGGAGGAGCCACTGGATGAGGCC
CAAGATGATGACCTAGATGAGCTGATGGAGATGGAGCCGACCTTTGTTCACGCGTCATCCCAGA
CTTCTGGCCCCACAAGTGGTTACCACGCCGAAAACTTCCTGGGTGCATCACCTCCCATAATACA
GCCTAGCAGACGGAGGAACCAGAATCGAGTCCCACTTCTGGAAGGCCTTCCAGGCACCAATTCA
CCATTCTACAGCTCCCCCCAACTGATTCGCCGCACAGGTCGTTTAGGGCAACGCCAAGTTCGAA
GACGCCCCCCTGTGCTTTTCCGCCTCACTCCGAGACAGGGGGGCCACCGAGCTGCTCGTGGCCG
AATTCGAGTGTGAGTGCTGGGGCCAGATGGCCACCCAGAACACACCCTTCTTTTGCATCCCCCG
CCCCTGCTATTGCTGCCATACCTGCCCCATTTGCTGACCAGGACTTCAGGGAGTTTCAGACCTG
CAGAACCTGAAGAAGACCTGCAGAATTCCAGACCATCTTGCAACCATGACCAGAGAGCGACGTG
TGCCCAACCAGGGCCACCTGGGAAAGGAGGGATCAGCAATAGCTGCCCTCTTGGCATGTACTCT
GCTCAGTCCGGCCACGAGCTGGAGAGCAAGTTTCTGGGCCTGTTCCCATAAATGAACTGGTCAC
CCTCTTGTATTTCCCCTCTGGTCGTTCCTAACCCTCATCTCTCCTGCGTTTCTTCACCCTATGT
TCTACAGTTTTATTCTCTGACTGACCCACCAGGACTTCACCCAATGCCTCACTGATCTGCCCCA
ATGAGCAAGAGGACAGGCTACCCTGAACTCCTAAAGCCACTGAGGCCAGTTGCTAGATATAATC
GATGGTGAGCAGGATGGTATCCAGAAATGTCCCTAGAAGCCTACACTCATTTCATGCCACACCT
CCAGCAGAGGGCCTGGAAGAGGACCCGACATCTAGCCCAGTGAGAGTGTGCAAAGCCACATGTC
AAATGGACAACTTGACGGAGATTTGCCCTTGACTGACTGTGCAGGCTGGTTCCACTTACAGCAC
TTGAGTTTACCTTTGCACAGATTCCTGTATCAGGGCTCTTGGACTGACTTGCCACACATCTGGA
GCCCTTTCCTCTCACCACATTGCCCTCCTGGGCACCCCCGGTGGACAGCGCCCAACATTGCAGG
CTCCACAACTTTCCTTGATGTTGCCTAAAGGGTAGCCAGTTAGGGTTCCGGAGAGGAGAAGGAG
GAAGAAGAGGAGGAGGAGAAAGAACCAGCAACGATCATTCTGCCATTGTAAAGAGTGACTCTTT
CCTTAGGGATGGTGGTCTTCTCCCCTTGCCAGGCCTTGGACTGCAGCCCCCAGTCAAAGGTCTT
TGCAGGACACTTTCTATCCTTGGAGTTGCAGAGGAGGCCTGATTGGCCATTCCTTCTGGGACAG
ACAGAGAGAGGGCCCATGGCCTGCTCTGAGCTCCCTTCAATTTCAAGGAACCCTTAGTTCTGAG
AGGAGAGAGGAAGGCTGTACCTACCGTGGCCTCACAGCTGGGACCCCTCATGGGGGCCAACCCC
TGGCCTGCTGCTGTGCTTCAGTGACACAGTAAAGCTTAAGAGGGTGGCTGCCTCCTAGGAACTC
CTGGGACTTCTAGGTACAAACTCAGGTGCCCTTATAAAGAGACCCACTGCTTGCCTTGAGTCCA
GAAAGCACTGCTTCTGCAGTGAAAAACACACACTTACTATGTCAGTTTTGGCCATAAAATGCCA
GCCAAATCCACTGCTGGCCTGAACTGCCCCTGGACACTGGACTTTCTGCACAGTGACTGGCAGC
AGAGCAAGTGCAGCCAGGGTTTGTGGCCAAAGGGAAGAAAGCATAGTAAATTCAACCTCTGTTC
CTCATGGGATTCTGACCGATAACCTCAGGCCGACCTTAGGATCTTGGGCCTGGAGGCAAGAGAA
AAAAGCTGGAGGAAGAGGAGTCGCAGAGAAACCCAGTCCTCTGACTGGTTTCTGGTGAGGTCTC
TATTCATCAGTGGGAGCTGATTTTATCTGATTTCCTCAAGAGTGCATTCCAGAAGGGGACCTGC
TATTCTTCGAGGCAGTGGACCCTGTTTGCTGATGGTCAACACTCTGGCCCTGCTGCCCCATGTC
CCTGTGGAGAAGTGTGAAGGACGGGTGCCTTAAACCCACACTTCCAGGGACCCTTCAGCACAGG
TCCTGCCTGTTCCCATGGTGCTTCTCACCCCGAACCCTCAGAGCCACAGCCAGGGATAGAGCAG
ATGAGCAGTGAGCTGGTTTCCACCCTCTGGGGCAGGAGGGGCTTGGGCTTCCCTTTGACCCTCT
TCCTTCCTTTCCCAGATCTTCAATATTTGTTGTGATGTAACAGCCATAAGAGCTGTAAGAGGAA
CTGTGGGCTTTGGGAGCTTTCTTGGGTTGAAAGAGGGGTGGGGGGAGGGGATGCATGCAGGGGT
ATGAAGGCAGCCCAAGGTCTCCCAGAGGCTCGGGAGGAAACCCTTTTGGAATACATGTGTTATT
GTTGCATTACTGTGTTGTGAAGATAAGAAGCTGCTCTGTATGCTAAAGCTTTCTCTCCTCAATA
AAAATATAAAGGGTGTGTAAA
hide sequence
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| RefSeq Acc Id: |
XP_003805311 ⟸ XM_003805263 |
| - Sequence: |
MSEASGNLNSLRMANVALREELNALRGENANLGLQLGRALAEVNSLRGNVSSYIRWPVPIVPVL
AEENLEFALSEIEAIPGGELPFLCRPPPRAEPDCISDDLLINVIQDRSTPDGPADPPLLPIPPP
PALPPPASKEPPPQPPLAPLEWPEIEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLI
SFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPRVAKKAIRKLKQGHCTLGSYAD
AFQFLAQFLSWDDCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERKVRVPKPIPLP
GVRNIIFPFAPSPNEEESEDEEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKE
EEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGEPQQDPGTEETY
GEVEEEPLDEAQDDDLDELMEMEPTFVHASSQTSGPTSGYHAENFLGASPPIIQPSRRRNQNRV
PLLEGLPGTNSPFYSSPQLIRRTGRLGQRQVRRRPPVLFRLTPRQGGHRAARGRIRV
hide sequence
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Additional Information
External Database Links
| Database |
Acc Id |
Source(s) |
| NCBI Gene |
RGAG4 |
ENTREZGENE |
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2017-03-28 |
RTL5 |
retrotransposon Gag like 5 |
RGAG4 |
retrotransposon gag domain containing 4 |
Symbol and/or name change |
5135510 |
APPROVED |
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