ANKRD13A (ankyrin repeat domain 13A) - Rat Genome Database

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Gene: ANKRD13A (ankyrin repeat domain 13A) Pan paniscus
Analyze
Symbol: ANKRD13A
Name: ankyrin repeat domain 13A
RGD ID: 11968561
Description: ENCODES a protein that exhibits ubiquitin-modified protein reader activity (inferred); INVOLVED IN negative regulation of protein localization to endosome (inferred); negative regulation of receptor internalization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); endosome (inferred); late endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 13A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210118,066,369 - 118,106,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112118,062,768 - 118,103,839 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012107,575,427 - 107,615,706 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112110,970,433 - 111,009,773 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,979,786 - 111,007,899 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ANKRD13A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210118,066,369 - 118,106,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112118,062,768 - 118,103,839 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012107,575,427 - 107,615,706 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112110,970,433 - 111,009,773 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,979,786 - 111,007,899 (+)Ensemblpanpan1.1panPan2
ANKRD13A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812109,999,213 - 110,039,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12109,999,186 - 110,039,763 (+)EnsemblGRCh38hg38GRCh38
GRCh3712110,437,235 - 110,477,568 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,921,618 - 108,961,620 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412108,899,954 - 108,939,953NCBI
Celera12110,061,469 - 110,101,471 (+)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12107,452,978 - 107,493,242 (+)NCBIHuRef
CHM1_112110,405,030 - 110,445,032 (+)NCBICHM1_1
T2T-CHM13v2.012109,974,902 - 110,015,456 (+)NCBIT2T-CHM13v2.0
Ankrd13a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,913,009 - 114,943,882 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,912,738 - 114,944,261 (+)EnsemblGRCm39 Ensembl
GRCm385114,774,948 - 114,805,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,774,677 - 114,806,200 (+)EnsemblGRCm38mm10GRCm38
MGSCv375115,225,149 - 115,255,830 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,036,139 - 115,066,820 (+)NCBIMGSCv36mm8
Celera5111,873,346 - 111,903,995 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.99NCBI
Ankrd13a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81247,458,828 - 47,488,959 (-)NCBIGRCr8
mRatBN7.21241,798,196 - 41,828,327 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,798,199 - 41,829,327 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,966,191 - 42,995,521 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,579,769 - 43,609,099 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,640,261 - 42,669,591 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,558,587 - 47,588,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,558,590 - 47,588,335 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01249,352,113 - 49,382,397 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,086,125 - 43,115,877 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,949,513 - 42,979,265 (-)NCBI
Celera1243,413,708 - 43,443,457 (-)NCBICelera
Cytogenetic Map12q16NCBI
Ankrd13a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,576,406 - 8,610,995 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,576,406 - 8,610,878 (-)NCBIChiLan1.0ChiLan1.0
ANKRD13A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,135,500 - 17,168,003 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,137,297 - 17,167,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,634,213 - 18,666,708 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02617,479,956 - 17,512,486 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2617,479,969 - 17,512,837 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12618,843,776 - 18,876,267 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02617,469,736 - 17,502,237 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02617,487,197 - 17,519,707 (-)NCBIUU_Cfam_GSD_1.0
Ankrd13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118143,858,198 - 143,894,383 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367691,581,187 - 1,617,712 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367691,581,517 - 1,617,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD13A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,954,347 - 40,990,451 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,954,345 - 40,995,882 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21443,479,735 - 43,506,000 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD13A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111105,238,471 - 105,280,712 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11105,238,744 - 105,281,489 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037139,840,457 - 139,882,147 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd13a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,479,421 - 10,515,500 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474710,479,421 - 10,515,492 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048352   ⟹   ENSPPAP00000025525
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12110,979,786 - 111,007,899 (+)Ensembl
RefSeq Acc Id: XM_034934445   ⟹   XP_034790336
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v210118,066,612 - 118,106,651 (+)NCBI
NHGRI_mPanPan112118,063,028 - 118,103,838 (+)NCBI
Mhudiblu_PPA_v012107,575,683 - 107,615,706 (+)NCBI
RefSeq Acc Id: XM_055096118   ⟹   XP_054952093
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v210118,066,369 - 118,106,651 (+)NCBI
NHGRI_mPanPan112118,062,768 - 118,103,837 (+)NCBI
RefSeq Acc Id: XM_063593644   ⟹   XP_063449714
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v210118,070,280 - 118,106,651 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034790336 (Get FASTA)   NCBI Sequence Viewer  
  XP_054952093 (Get FASTA)   NCBI Sequence Viewer  
  XP_063449714 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000025525.1
Reference Protein Sequences
RefSeq Acc Id: XP_034790336   ⟸   XM_034934445
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BB75 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000025525   ⟸   ENSPPAT00000048352
RefSeq Acc Id: XP_054952093   ⟸   XM_055096118
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BB75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063449714   ⟸   XM_063593644
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035872 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048352.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD13 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
NCBI Gene ANKRD13A ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13A UniProtKB/TrEMBL
  PTHR12447 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  GPCR_chapero_1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A2R9BB75 ENTREZGENE, UniProtKB/TrEMBL