CLDN5 (claudin 5) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: CLDN5 (claudin 5) Pan paniscus
Analyze
Symbol: CLDN5
Name: claudin 5
RGD ID: 11966443
Description: INVOLVED IN cell-cell junction assembly (ortholog); establishment of blood-retinal barrier (ortholog); establishment of endothelial barrier (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); DiGeorge syndrome (ortholog); FOUND IN apicolateral plasma membrane (ortholog); bicellular tight junction (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: claudin-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12217,957,605 - 17,962,121 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,958,182 - 17,959,093 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0222,282,215 - 2,286,724 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CLDN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12217,957,605 - 17,962,121 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,958,182 - 17,959,093 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0222,282,215 - 2,286,724 (-)NCBIMhudiblu_PPA_v0panPan3
CLDN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2219,523,024 - 19,527,545 (-)EnsemblGRCh38hg38GRCh38
GRCh382219,523,024 - 19,525,337 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372219,510,547 - 19,512,860 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh372219,510,547 - 19,515,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,890,550 - 17,892,860 (-)NCBINCBI36hg18NCBI36
Build 342217,885,103 - 17,887,414NCBI
Celera223,362,807 - 3,365,120 (-)NCBI
Cytogenetic Map22q11.21NCBI
HuRef223,131,378 - 3,133,692 (-)NCBIHuRef
CHM1_12219,510,114 - 19,512,427 (-)NCBICHM1_1
Cldn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,595,597 - 18,597,012 (+)NCBIGRCm39mm39
GRCm381618,776,847 - 18,778,262 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,776,847 - 18,778,262 (+)EnsemblGRCm38mm10GRCm38
MGSCv371618,776,940 - 18,778,353 (+)NCBIGRCm37mm9NCBIm37
MGSCv361618,690,410 - 18,691,823 (+)NCBImm8
Celera1619,350,901 - 19,352,314 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.63NCBI
Cldn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,212,822 - 82,214,248 (-)NCBI
Rnor_6.0 Ensembl1186,356,294 - 86,357,718 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01186,356,292 - 86,357,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01189,458,258 - 89,459,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1180,993,136 - 80,994,562 (-)NCBICelera
Cytogenetic Map11q23NCBI
Cldn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,509,676 - 18,510,332 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,509,501 - 18,511,267 (+)NCBIChiLan1.0ChiLan1.0
CLDN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2629,703,683 - 29,704,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12629,702,464 - 29,704,950 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cldn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366193,455,508 - 3,457,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,161,032 - 51,163,482 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,161,490 - 51,162,382 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,778,542 - 54,779,434 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,227,881 - 6,230,199 (+)NCBI
ChlSab1.1 Ensembl196,228,965 - 6,229,621 (+)Ensembl
Cldn5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624747164,113 - 166,502 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014343226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000058074   ⟹   ENSPPAP00000035186
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2217,958,182 - 17,959,093 (-)Ensembl
RefSeq Acc Id: XM_014343226   ⟹   XP_014198712
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12217,957,605 - 17,962,121 (-)NCBI
Mhudiblu_PPA_v0222,282,215 - 2,286,724 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_014198712 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_014198712   ⟸   XM_014343226
- Sequence:
RefSeq Acc Id: ENSPPAP00000035186   ⟸   ENSPPAT00000058074


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040414 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000035186 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058074 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin5 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
NCBI Gene CLDN5 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN5 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A2R9C0D5_PANPA UniProtKB/TrEMBL