IHO1 (interactor of HORMAD1 1) - Rat Genome Database
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Gene: IHO1 (interactor of HORMAD1 1) Pan paniscus
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Symbol: IHO1
Name: interactor of HORMAD1 1
RGD ID: 11966127
Description: INVOLVED IN homologous chromosome pairing at meiosis (ortholog); meiotic DNA double-strand break formation (ortholog); oogenesis (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); FOUND IN condensed nuclear chromosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CCDC36; coiled-coil domain containing 36; coiled-coil domain-containing protein 36; interactor of HORMAD1 protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,217,333 - 50,260,487 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,239,250 - 50,259,890 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,122,120 - 49,181,228 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
IHO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,217,333 - 50,260,487 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,239,250 - 50,259,890 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,122,120 - 49,181,228 (+)NCBIMhudiblu_PPA_v0panPan3
IHO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,198,428 - 49,258,106 (+)EnsemblGRCh38hg38GRCh38
GRCh38349,198,428 - 49,258,106 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,235,861 - 49,295,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,210,865 - 49,270,160 (+)NCBINCBI36hg18NCBI36
Celera349,193,717 - 49,258,916 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,293,567 - 49,352,860 (+)NCBIHuRef
CHM1_1349,188,591 - 49,248,327 (+)NCBICHM1_1
Iho1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,280,691 - 108,309,040 (-)NCBIGRCm39mm39
GRCm39 Ensembl9108,280,810 - 108,305,683 (-)Ensembl
GRCm389108,403,492 - 108,431,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,403,611 - 108,428,484 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,305,952 - 108,330,813 (-)NCBIGRCm37mm9NCBIm37
MGSCv369108,261,591 - 108,294,188 (-)NCBImm8
Celera9108,012,831 - 108,037,747 (-)NCBICelera
Cytogenetic Map9F2NCBI
Iho1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,091,134 - 109,126,386 (-)NCBI
Rnor_6.0 Ensembl8117,183,343 - 117,211,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,182,484 - 117,215,390 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,531,078 - 116,559,700 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,394,590 - 108,425,677 (-)NCBICelera
Cytogenetic Map8q32NCBI
Iho1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555321,198,316 - 1,226,875 (+)NCBIChiLan1.0ChiLan1.0
IHO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,965,480 - 39,990,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,964,629 - 40,006,726 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Iho1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529905,692 - 929,896 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IHO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,775,668 - 31,836,911 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,802,963 - 31,836,911 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,060,241 - 35,067,709 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IHO1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,593,516 - 10,653,519 (+)NCBI
Iho1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,208,648 - 3,249,281 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034956450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000060897   ⟹   ENSPPAP00000037994
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,239,250 - 50,259,890 (+)Ensembl
RefSeq Acc Id: XM_034956450   ⟹   XP_034812341
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0349,122,120 - 49,181,228 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034812341 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034812341   ⟸   XM_034956450
RefSeq Acc Id: ENSPPAP00000037994   ⟸   ENSPPAT00000060897


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041728 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000037994 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060897 UniProtKB/TrEMBL
InterPro IHO1 UniProtKB/TrEMBL
NCBI Gene CCDC36 ENTREZGENE
PANTHER PTHR35662 UniProtKB/TrEMBL
Pfam IHO1 UniProtKB/TrEMBL
UniProt A0A2R9C847_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-03-10 IHO1  interactor of HORMAD1 1  CCDC36  coiled-coil domain containing 36  Symbol and/or name change 5135510 APPROVED