NFIA (nuclear factor I A) - Rat Genome Database

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Gene: NFIA (nuclear factor I A) Pan paniscus
Analyze
Symbol: NFIA
Name: nuclear factor I A
RGD ID: 11964765
Description: ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN exit from mitosis (ortholog); gene expression (ortholog); generation of neurons (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Macrocephaly (ortholog); FOUND IN cell junction (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear factor 1 A-type
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21165,396,653 - 165,778,359 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,550,471 - 164,927,450 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0160,331,945 - 60,713,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,159,978 - 62,534,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,938,945 - 62,526,753 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell junction  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NFIA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21165,396,653 - 165,778,359 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,550,471 - 164,927,450 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0160,331,945 - 60,713,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,159,978 - 62,534,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,938,945 - 62,526,753 (+)Ensemblpanpan1.1panPan2
NFIA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,077,227 - 61,462,788 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl160,865,259 - 61,462,788 (+)EnsemblGRCh38hg38GRCh38
GRCh37161,542,899 - 61,928,460 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,320,881 - 61,694,624 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,260,315 - 61,634,057NCBI
Celera159,831,591 - 60,216,841 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef159,635,821 - 60,040,693 (+)NCBIHuRef
CHM1_1161,658,337 - 62,043,823 (+)NCBICHM1_1
T2T-CHM13v2.0160,956,019 - 61,341,601 (+)NCBIT2T-CHM13v2.0
Nfia
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39497,469,534 - 98,007,113 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl497,660,971 - 98,007,111 (+)EnsemblGRCm39 Ensembl
GRCm38497,578,066 - 98,118,876 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl497,772,734 - 98,118,874 (+)EnsemblGRCm38mm10GRCm38
MGSCv37497,248,634 - 97,785,567 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36497,269,917 - 97,604,410 (+)NCBIMGSCv36mm8
Celera495,943,228 - 96,479,959 (+)NCBICelera
Cytogenetic Map4C5- C6NCBI
cM Map445.52NCBI
Nfia
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85117,359,006 - 117,897,391 (+)NCBIGRCr8
mRatBN7.25112,436,655 - 112,781,878 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5112,436,644 - 112,775,885 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5115,002,895 - 115,335,577 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05116,728,227 - 117,060,911 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05116,790,806 - 117,123,482 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05116,421,895 - 116,750,381 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5116,420,690 - 116,751,416 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05120,364,854 - 120,694,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45118,152,938 - 118,507,056 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15118,170,466 - 118,513,317 (+)NCBI
Celera5111,023,750 - 111,350,695 (+)NCBICelera
Cytogenetic Map5q33NCBI
Nfia
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542327,806,873 - 28,112,268 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542327,799,976 - 28,108,307 (-)NCBIChiLan1.0ChiLan1.0
NFIA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1548,489,521 - 49,064,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl548,496,773 - 49,064,848 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha548,556,341 - 48,929,909 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0548,679,005 - 49,048,341 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl548,678,684 - 49,048,459 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1548,627,327 - 48,995,641 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0548,573,147 - 48,946,371 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0548,838,229 - 49,211,486 (-)NCBIUU_Cfam_GSD_1.0
Nfia
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505874,245,514 - 74,803,937 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936522615,012 - 957,282 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936522612,357 - 1,171,079 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFIA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6150,835,494 - 151,426,749 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16150,834,002 - 151,229,773 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26138,764,564 - 139,158,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NFIA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12071,573,729 - 72,171,268 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603345,443,121 - 45,829,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfia
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474231,898,892 - 32,189,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474231,895,791 - 32,198,156 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000002188   ⟹   ENSPPAP00000000508
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl161,938,945 - 62,526,694 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000002190   ⟹   ENSPPAP00000000510
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,150,065 - 62,526,694 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000002193   ⟹   ENSPPAP00000000513
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,160,001 - 62,526,753 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000002194   ⟹   ENSPPAP00000000514
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,160,001 - 62,526,694 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000002196   ⟹   ENSPPAP00000000516
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,160,001 - 62,526,694 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000002198   ⟹   ENSPPAP00000000518
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,160,001 - 62,526,694 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000002200   ⟹   ENSPPAP00000000520
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,475,822 - 62,502,975 (+)Ensembl
RefSeq Acc Id: XM_034966283   ⟹   XP_034822174
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21165,396,653 - 165,778,171 (-)NCBI
NHGRI_mPanPan11164,550,471 - 164,927,256 (-)NCBI
Mhudiblu_PPA_v0160,331,945 - 60,713,729 (+)NCBI
RefSeq Acc Id: XM_034966293   ⟹   XP_034822184
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21165,396,653 - 165,778,359 (-)NCBI
NHGRI_mPanPan11164,550,471 - 164,927,450 (-)NCBI
Mhudiblu_PPA_v0160,332,217 - 60,713,729 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034822174   ⟸   XM_034966283
- Peptide Label: isoform X1
- UniProtKB: A0A2R8Z6T4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822184   ⟸   XM_034966293
- Peptide Label: isoform X2
- UniProtKB: A0A2R8Z6T5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000000508   ⟸   ENSPPAT00000002188
RefSeq Acc Id: ENSPPAP00000000518   ⟸   ENSPPAT00000002198
RefSeq Acc Id: ENSPPAP00000000510   ⟸   ENSPPAT00000002190
RefSeq Acc Id: ENSPPAP00000000514   ⟸   ENSPPAT00000002194
RefSeq Acc Id: ENSPPAP00000000513   ⟸   ENSPPAT00000002193
RefSeq Acc Id: ENSPPAP00000000516   ⟸   ENSPPAT00000002196
RefSeq Acc Id: ENSPPAP00000000520   ⟸   ENSPPAT00000002200
Protein Domains
CTF/NF-I


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000001224 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000002188.1 UniProtKB/TrEMBL
  ENSPPAT00000002190.1 UniProtKB/TrEMBL
  ENSPPAT00000002193.1 UniProtKB/TrEMBL
  ENSPPAT00000002194.1 UniProtKB/TrEMBL
  ENSPPAT00000002196.1 UniProtKB/TrEMBL
  ENSPPAT00000002198.1 UniProtKB/TrEMBL
  ENSPPAT00000002200.1 UniProtKB/TrEMBL
InterPro CTF/NFI UniProtKB/TrEMBL
  CTF/NFI_DNA-bd-dom UniProtKB/TrEMBL
  CTF/NFI_DNA-bd_CS UniProtKB/TrEMBL
  CTF/NFI_DNA-bd_N UniProtKB/TrEMBL
  MAD_homology1_Dwarfin-type UniProtKB/TrEMBL
NCBI Gene NFIA ENTREZGENE
PANTHER NUCLEAR FACTOR 1 A-TYPE UniProtKB/TrEMBL
  PTHR11492 UniProtKB/TrEMBL
Pfam CTF_NFI UniProtKB/TrEMBL
  MH1 UniProtKB/TrEMBL
  NfI_DNAbd_pre-N UniProtKB/TrEMBL
PROSITE CTF_NFI_1 UniProtKB/TrEMBL
  CTF_NFI_2 UniProtKB/TrEMBL
SMART DWA UniProtKB/TrEMBL
UniProt A0A2R8Z6T4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8Z6T5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8Z6T6_PANPA UniProtKB/TrEMBL
  A0A2R8Z6V3_PANPA UniProtKB/TrEMBL
  A0A2R8ZAK8_PANPA UniProtKB/TrEMBL
  A0A2R8ZAL8_PANPA UniProtKB/TrEMBL
  A0A2R8ZD27_PANPA UniProtKB/TrEMBL