ECPAS (Ecm29 proteasome adaptor and scaffold) - Rat Genome Database

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Gene: ECPAS (Ecm29 proteasome adaptor and scaffold) Pan paniscus
Analyze
Symbol: ECPAS
Name: Ecm29 proteasome adaptor and scaffold
RGD ID: 11964591
Description: ENCODES a protein that exhibits proteasome binding (ortholog); INVOLVED IN ERAD pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN centrosome (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KIAA0368; KIAA0368 ortholog; proteasome adapter and scaffold protein ECM29; proteasome-associated protein ECM29 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21127,937,419 - 28,061,698 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1927,939,978 - 28,064,059 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0982,499,075 - 82,623,007 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19110,662,590 - 110,774,511 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9110,662,590 - 110,786,472 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ECPAS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21127,937,419 - 28,061,698 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1927,939,978 - 28,064,059 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0982,499,075 - 82,623,007 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19110,662,590 - 110,774,511 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9110,662,590 - 110,786,472 (-)Ensemblpanpan1.1panPan2
ECPAS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389111,360,685 - 111,484,383 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9111,360,685 - 111,484,745 (-)EnsemblGRCh38hg38GRCh38
GRCh379114,122,965 - 114,246,663 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369113,162,794 - 113,286,846 (-)NCBINCBI36Build 36hg18NCBI36
Celera984,622,093 - 84,746,150 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef983,721,967 - 83,846,182 (-)NCBIHuRef
CHM1_19114,269,444 - 114,393,512 (-)NCBICHM1_1
T2T-CHM13v2.09123,532,059 - 123,655,812 (-)NCBIT2T-CHM13v2.0
Ecpas
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39458,797,234 - 58,917,748 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl458,798,911 - 58,912,749 (-)EnsemblGRCm39 Ensembl
GRCm38458,797,234 - 58,917,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl458,798,911 - 58,912,749 (-)EnsemblGRCm38mm10GRCm38
MGSCv37458,812,902 - 58,925,597 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36458,894,084 - 59,006,779 (-)NCBIMGSCv36mm8
Celera458,712,861 - 58,825,593 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.35NCBI
Ecpas
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,398,449 - 78,509,077 (-)NCBIGRCr8
mRatBN7.2573,601,745 - 73,714,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,604,533 - 73,713,860 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0575,928,510 - 76,040,771 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl575,931,293 - 76,039,760 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,073,657 - 80,184,763 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4576,827,647 - 76,942,881 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera572,425,077 - 72,537,191 (-)NCBICelera
Cytogenetic Map5q24NCBI
Ecpas
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541915,782,453 - 15,890,022 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541915,775,208 - 15,886,101 (+)NCBIChiLan1.0ChiLan1.0
ECPAS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11166,051,414 - 66,141,931 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1166,051,443 - 66,141,802 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1164,462,290 - 64,560,906 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01167,183,925 - 67,282,892 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1167,183,925 - 67,282,889 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11165,702,391 - 65,800,793 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01165,725,419 - 65,824,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01166,414,685 - 66,513,468 (-)NCBIUU_Cfam_GSD_1.0
Ecpas
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947181,345,187 - 181,460,324 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365591,807,753 - 1,921,423 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365591,807,768 - 1,918,529 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ECPAS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,218,819 - 252,324,928 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,221,687 - 252,325,068 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21283,049,989 - 283,120,665 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ECPAS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11228,076,607 - 28,201,556 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1228,087,447 - 28,203,848 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603514,575,484 - 14,701,030 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ecpas
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475867,650 - 195,122 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475867,558 - 194,653 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000047835   ⟹   ENSPPAP00000025009
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9110,662,590 - 110,774,514 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000047846   ⟹   ENSPPAP00000025020
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9110,663,928 - 110,786,472 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000047851   ⟹   ENSPPAP00000025025
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9110,663,928 - 110,757,211 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000047853   ⟹   ENSPPAP00000025027
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9110,663,928 - 110,752,707 (-)Ensembl
RefSeq Acc Id: XM_034967975   ⟹   XP_034823866
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21127,938,215 - 28,061,698 (+)NCBI
NHGRI_mPanPan1927,940,589 - 28,064,059 (+)NCBI
Mhudiblu_PPA_v0982,499,075 - 82,622,458 (-)NCBI
RefSeq Acc Id: XM_034967976   ⟹   XP_034823867
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21127,938,215 - 28,061,698 (+)NCBI
NHGRI_mPanPan1927,940,789 - 28,064,059 (+)NCBI
Mhudiblu_PPA_v0982,499,075 - 82,622,255 (-)NCBI
RefSeq Acc Id: XM_034967977   ⟹   XP_034823868
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21127,937,657 - 28,061,698 (+)NCBI
NHGRI_mPanPan1927,940,028 - 28,064,059 (+)NCBI
Mhudiblu_PPA_v0982,499,075 - 82,623,007 (-)NCBI
RefSeq Acc Id: XM_034967978   ⟹   XP_034823869
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21127,937,419 - 28,061,698 (+)NCBI
NHGRI_mPanPan1927,939,978 - 28,064,059 (+)NCBI
Mhudiblu_PPA_v0982,499,078 - 82,622,986 (-)NCBI
RefSeq Acc Id: XM_055117735   ⟹   XP_054973710
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21127,948,535 - 28,061,698 (+)NCBI
NHGRI_mPanPan1927,950,896 - 28,064,059 (+)NCBI
RefSeq Acc Id: XM_055117736   ⟹   XP_054973711
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21127,937,999 - 28,061,698 (+)NCBI
NHGRI_mPanPan1927,940,361 - 28,064,059 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034823868   ⟸   XM_034967977
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B9S0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034823866   ⟸   XM_034967975
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B9S0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034823867   ⟸   XM_034967976
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B9S0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034823869   ⟸   XM_034967978
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B9S0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000025009   ⟸   ENSPPAT00000047835
RefSeq Acc Id: ENSPPAP00000025020   ⟸   ENSPPAT00000047846
RefSeq Acc Id: ENSPPAP00000025027   ⟸   ENSPPAT00000047853
RefSeq Acc Id: ENSPPAP00000025025   ⟸   ENSPPAT00000047851
RefSeq Acc Id: XP_054973711   ⟸   XM_055117736
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054973710   ⟸   XM_055117735
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035590 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047835.1 UniProtKB/TrEMBL
  ENSPPAT00000047846.1 UniProtKB/TrEMBL
  ENSPPAT00000047851.1 UniProtKB/TrEMBL
  ENSPPAT00000047853.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Ecm29 UniProtKB/TrEMBL
NCBI Gene KIAA0368 ENTREZGENE
PANTHER PTHR23346:SF19 UniProtKB/TrEMBL
  TRANSLATIONAL ACTIVATOR GCN1-RELATED UniProtKB/TrEMBL
Pfam Ecm29 UniProtKB/TrEMBL
  Vac14_Fab1_bd UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R9B605_PANPA UniProtKB/TrEMBL
  A0A2R9B9R4_PANPA UniProtKB/TrEMBL
  A0A2R9B9S0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BD41_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-20 ECPAS  Ecm29 proteasome adaptor and scaffold  KIAA0368  KIAA0368 ortholog  Symbol and/or name change 5135510 APPROVED