CAPNS1 (calpain small subunit 1) - Rat Genome Database

Name: CAPNS1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CAPNS1 (calpain small subunit 1) Pan paniscus

Analyze

Symbol:

CAPNS1

Name:

calpain small subunit 1

RGD ID:

11962509

Description:

ENCODES a protein that exhibits calcium-dependent cysteine-type endopeptidase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN protein catabolic process (ortholog); proteolysis (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN calpain complex (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	42,142,012 - 42,152,045 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	44,125,513 - 44,135,599 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	33,059,291 - 33,069,311 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,806,746 - 41,816,507 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,806,746 - 41,816,858 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brugada syndrome 5 (ISO)

COVID-19 (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 75 (ISO)

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein catabolic process (ISO)

proteolysis (ISO)

Cellular Component

calpain complex (IEA,ISO)

cytoplasm (IEA)

cytosol (IEA)

membrane (IEA)

Molecular Function

calcium ion binding (IEA)

calcium-dependent cysteine-type endopeptidase activity (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CAPNS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	42,142,012 - 42,152,045 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	44,125,513 - 44,135,599 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	33,059,291 - 33,069,311 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,806,746 - 41,816,507 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,806,746 - 41,816,858 (+)	Ensembl	panpan1.1		panPan2

CAPNS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	36,140,066 - 36,150,353 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	36,139,953 - 36,150,353 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	36,630,968 - 36,641,255 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	41,322,758 - 41,333,095 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	41,322,757 - 41,333,094	NCBI
Celera	19	33,345,090 - 33,355,427 (+)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	33,136,390 - 33,146,727 (+)	NCBI		HuRef
CHM1_1	19	36,632,259 - 36,643,261 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,685,882 - 38,696,171 (+)	NCBI		T2T-CHM13v2.0

Capns1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	29,886,359 - 29,898,308 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	29,886,361 - 29,898,236 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,186,934 - 30,198,883 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,186,936 - 30,198,811 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	30,971,961 - 30,980,067 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	29,895,708 - 29,903,784 (-)	NCBI		MGSCv36	mm8
Celera	7	24,783,745 - 24,791,616 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	17.31	NCBI

Capns1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	94,572,083 - 94,582,332 (-)	NCBI		GRCr8
mRatBN7.2	1	85,444,613 - 85,454,861 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,444,608 - 85,454,795 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	90,861,573 - 90,871,706 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,325,245 - 99,335,358 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	92,619,837 - 92,629,970 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	91,058,528 - 91,064,880 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	88,652,446 - 88,657,845 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	88,652,446 - 88,657,845 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	92,056,305 - 92,207,135 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,519,568 - 85,525,929 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	79,820,845 - 79,830,375 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Capns1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	2,447,111 - 2,452,982 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	2,446,631 - 2,454,369 (-)	NCBI	ChiLan1.0	ChiLan1.0

CAPNS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,549,608 - 116,558,928 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,550,000 - 116,558,807 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	115,955,616 - 115,964,853 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,151,011 - 117,160,206 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,151,015 - 117,159,238 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	116,720,393 - 116,729,644 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,340,642 - 116,349,899 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,393,688 - 117,402,927 (-)	NCBI		UU_Cfam_GSD_1.0

Capns1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	11,381,612 - 11,391,526 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936922	151,599 - 164,787 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936922	151,791 - 161,655 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAPNS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	45,511,295 - 45,518,610 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	45,511,410 - 45,518,610 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,913,605 - 40,920,805 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CAPNS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	31,049,509 - 31,061,219 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	31,050,494 - 31,061,421 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	8,849,775 - 8,861,494 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Capns1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	10,382,157 - 10,390,768 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003816113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008969121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008969122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008969123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057300538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000055014 ⟹ ENSPPAP00000032148

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	41,806,746 - 41,816,507 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055023 ⟹ ENSPPAP00000032157

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	41,806,746 - 41,816,507 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055031 ⟹ ENSPPAP00000032165

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	41,807,832 - 41,816,858 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055032 ⟹ ENSPPAP00000032166

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	41,807,832 - 41,816,858 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055041 ⟹ ENSPPAP00000032175

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	41,807,832 - 41,815,993 (+)	Ensembl

RefSeq Acc Id:

XM_003816113 ⟹ XP_003816161

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	42,142,036 - 42,152,045 (+)	NCBI
NHGRI_mPanPan1	19	44,125,580 - 44,135,599 (+)	NCBI
Mhudiblu_PPA_v0	19	33,059,307 - 33,069,311 (+)	NCBI
PanPan1.1	19	41,806,746 - 41,816,507 (+)	NCBI

Sequence:

show sequence

AACGCGTAGGGCGGGGCCCAGACCTGGATCCAGCTAGCGGGGCGGTGTGGGGTGCGCATGCGCA
ATGTCCGCTTCGGCTCTAGGACCGCGCGGGCGACAGCAGGGCCGCGGTGCAGTGTCCGACCCGA
GAGTTGCGGCCTGAGTCACCGGCCCCGCCCTCCGGAGCCGGACGCTGCGGGAGGCCCGGGAGCG
GCAGTGGAACGGACTCCCAGAACTCCGGACGTGTGCGGCGCAGTGAGTCGCAGCCATGTTCCTG
GTTAACTCGTTCTTGAAGGGCGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGGTGGGGGCC
TGGGAAATGTGCTTGGAGGCCTGATCAGCGGGGCCGGGGGCGGCGGCGGCGGTGGTGGTGGAGG
CGGCGGTGGCGGTGGAACGGCCATGCGCATCCTAGGCGGAGTCATCAGCGCCATCAGCGAGGCG
GCTGCGCAGTACAACCCGGAGCCCCCGCCCCCACGCACACATTACTCCAACATTGAGGCCAACG
AGAGTGAGGAGGTCCGGCAGTTCCGGAGACTCTTTGCCCAGCTGGCTGGAGATGACATGGAGGT
CAGCGCCACAGAACTCATGAACATTCTCAATAAGGTTGTGACACGACACCCTGATCTGAAGACT
GATGGTTTTGGCATTGACACGTGTCGCAGCATGGTGGCCGTGATGGATAGCGACACCACAGGCA
AGCTGGGCTTTGAGGAATTCAAGTACTTGTGGAACAACATCAAAAGGTGGCAGGCCATATACAA
ACAGTTCGACACTGACCGATCAGGGACCATTTGTAGTAGTGAACTCCCAGGGGCCTTTCAGGCG
GCAGGGTTCCACCTGAATGAGCATCTCTATAACATGATCATCCGACGCTACTCAGATGAAAGTG
GGAACATGGATTTTGACAACTTCATCAGCTGCTTGGTCAGGCTGGACGCCATGTTCCGTGCCTT
CAAATCTCTTGACAGAGATGGCACTGGACAAATCCAGGTGAACATCCAGGAGTGGCTGCAGCTG
ACTATGTATTCCTGAACTGGAGCCCCAGACCCGCCCCCTCACCGCCTTGCTATAGGAGTCACCT
GGAGCCTCGGTCTCTCCCAGGGCCGATCCTGTCTGCAGTCACATCTTTGTGGGGCCTGCTGACC
CACAAGCTTTTGTTCTCTCAGTACTTGTTACCCAGCTTCTCAACATCCAGGGCCCAATATGCCC
TGCCTGGAGTTCCCCCTGGCTCTAGGACACTCTAACAAGCTCTGTCCAAGGGTCTCCCCATTCC
CACCAGGCCCTGCACACACCCACTCTGTAACCTCTCCCCTGTACCTGTGCCAAGCCTAGCACTT
GTGATGCTTCCATGCCCCGAGGGCCCTCTCTCAGTTCTGGGAGGATGACTCCAGTCCCTGCACG
CCCTGGCACACCCTTCACGGTTGCCACCCAGGCGGCCAAGCTCCAGACCGTGCCAGACCCAGGT
GCCCCAGTGCCTTTGTCTATATTCTGCTCCCAGCCTGCCAGGCCCAGGAGGAAATAAACATGCC
CCAGTTGCTGATCTCTA

hide sequence

RefSeq Acc Id:

XM_008969121 ⟹ XP_008967369

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	42,142,013 - 42,152,045 (+)	NCBI
NHGRI_mPanPan1	19	44,125,514 - 44,135,599 (+)	NCBI
Mhudiblu_PPA_v0	19	33,059,291 - 33,069,311 (+)	NCBI
PanPan1.1	19	41,806,746 - 41,816,507 (+)	NCBI

Sequence:

show sequence

AACGCGTAGGGCGGGGCCCAGACCTGGATCCAGCTAGCGGGGCGGTGTGGGGTGCGCATGCGCA
ATGTCCGCTTCGGCTCTAGGACCGCGCGGGCGACAGCAGGGCCGCGGTGCAGTGTCCGACCCGA
GAGTTGCGGCCTGAGTCACCGGCCCCGCCCTCCGGAGCCGGACGCTGCGGGAGGCCCGGGAGCG
GCAGTGGAACGGACTCCCAGAACTCCGGACGTGTGCGGCGCAGTGAGTCGCAGCCATGTTCCTG
GTTAACTCGTTCTTGAAGGGCGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGGTGGGGGCC
TGGGAAATGTGCTTGGAGGCCTGATCAGCGGGGCCGGGGGCGGCGGCGGCGGTGGTGGTGGAGG
CGGCGGTGGCGGTGGAACGGCCATGCGCATCCTAGGCGGAGTCATCAGCGCCATCAGCGAGGCG
GCTGCGCAGTACAACCCGGAGCCCCCGCCCCCACGCACACATTACTCCAACATTGAGGCCAACG
AGAGTGAGGAGGTCCGGCAGTTCCGGAGACTCTTTGCCCAGCTGGCTGGAGATGACATGGAGGT
CAGCGCCACAGAACTCATGAACATTCTCAATAAGGTTGTGACACGACACCCTGATCTGAAGACT
GATGGTTTTGGCATTGACACGTGTCGCAGCATGGTGGCCGTGATGGATAGCGACACCACAGGCA
AGCTGGGCTTTGAGGAATTCAAGTACTTGTGGAACAACATCAAAAGGTGGCAGGCCATATACAA
ACAGTTCGACACTGACCGATCAGGGACCATTTGTAGTAGTGAACTCCCAGGGGCCTTTCAGGCG
GCAGGGTTCCACCTGAATGAGCATCTCTATAACATGATCATCCGACGCTACTCAGATGAAAGTG
GGAACATGGATTTTGACAACTTCATCAGCTGCTTGGTCAGGCTGGACGCCATGTTCCGTGCCTT
CAAATCTCTTGACAGAGATGGCACTGGACAAATCCAGGTGAACATCCAGGAGGTAAGAACCCCC
ATATTGGGGTATGGGTGCCTGGGAGGACCCCACCCCTCAGCCCTTCATACCAGCTCTGAGCTGC
AGTCCCCTCCCTCCTATTTTGCCAGCAGTCCCTGGGTGAGGGCAAAGGGGCTGGTGCTCTTGGG
GTTCCCTGTCCTCACTCTCCACCCTCCTCTCCCCAGTGGCTGCAGCTGACTATGTATTCCTGAA
CTGGAGCCCCAGACCCGCCCCCTCACCGCCTTGCTATAGGAGTCACCTGGAGCCTCGGTCTCTC
CCAGGGCCGATCCTGTCTGCAGTCACATCTTTGTGGGGCCTGCTGACCCACAAGCTTTTGTTCT
CTCAGTACTTGTTACCCAGCTTCTCAACATCCAGGGCCCAATATGCCCTGCCTGGAGTTCCCCC
TGGCTCTAGGACACTCTAACAAGCTCTGTCCAAGGGTCTCCCCATTCCCACCAGGCCCTGCACA
CACCCACTCTGTAACCTCTCCCCTGTACCTGTGCCAAGCCTAGCACTTGTGATGCTTCCATGCC
CCGAGGGCCCTCTCTCAGTTCTGGGAGGATGACTCCAGTCCCTGCACGCCCTGGCACACCCTTC
ACGGTTGCCACCCAGGCGGCCAAGCTCCAGACCGTGCCAGACCCAGGTGCCCCAGTGCCTTTGT
CTATATTCTGCTCCCAGCCTGCCAGGCCCAGGAGGAAATAAACATGCCCCAGTTGCTGATCTCT
A

hide sequence

RefSeq Acc Id:

XM_008969122 ⟹ XP_008967370

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	42,142,012 - 42,152,045 (+)	NCBI
NHGRI_mPanPan1	19	44,125,513 - 44,135,599 (+)	NCBI
Mhudiblu_PPA_v0	19	33,059,291 - 33,069,311 (+)	NCBI
PanPan1.1	19	41,806,777 - 41,816,507 (+)	NCBI

Sequence:

show sequence

AGCTAGCGGGGCGGTGTGGGGTGCGCATGCGCAATGTCCGCTTCGGCTCTAGGACCGCGCGGGC
GACAGCAGGGCCGCGGTGCAGTGTCCGACCCGAGAGTTGCGGCCTGAGTCACCGGCCCCGCCCT
CCGGAGCCGGACGCTGCGGGAGGCCCGGGAGCGGCAGTGGAACGGACTCCCAGAACTCCGGACG
TGTGCGGCGTGAGTCGCAGCCATGTTCCTGGTTAACTCGTTCTTGAAGGGCGGCGGCGGCGGCG
GCGGGGGAGGCGGGGGCCTGGGTGGGGGCCTGGGAAATGTGCTTGGAGGCCTGATCAGCGGGGC
CGGGGGCGGCGGCGGCGGTGGTGGTGGAGGCGGCGGTGGCGGTGGAACGGCCATGCGCATCCTA
GGCGGAGTCATCAGCGCCATCAGCGAGGCGGCTGCGCAGTACAACCCGGAGCCCCCGCCCCCAC
GCACACATTACTCCAACATTGAGGCCAACGAGAGTGAGGAGGTCCGGCAGTTCCGGAGACTCTT
TGCCCAGCTGGCTGGAGATGACATGGAGGTCAGCGCCACAGAACTCATGAACATTCTCAATAAG
GTTGTGACACGACACCCTGATCTGAAGACTGATGGTTTTGGCATTGACACGTGTCGCAGCATGG
TGGCCGTGATGGATAGCGACACCACAGGCAAGCTGGGCTTTGAGGAATTCAAGTACTTGTGGAA
CAACATCAAAAGGTGGCAGGCCATATACAAACAGTTCGACACTGACCGATCAGGGACCATTTGT
AGTAGTGAACTCCCAGGGGCCTTTCAGGCGGCAGGGTTCCACCTGAATGAGCATCTCTATAACA
TGATCATCCGACGCTACTCAGATGAAAGTGGGAACATGGATTTTGACAACTTCATCAGCTGCTT
GGTCAGGCTGGACGCCATGTTCCGTGCCTTCAAATCTCTTGACAGAGATGGCACTGGACAAATC
CAGGTGAACATCCAGGAGGTAAGAACCCCCATATTGGGGTATGGGTGCCTGGGAGGACCCCACC
CCTCAGCCCTTCATACCAGCTCTGAGCTGCAGTCCCCTCCCTCCTATTTTGCCAGCAGTCCCTG
GGTGAGGGCAAAGGGGCTGGTGCTCTTGGGGTTCCCTGTCCTCACTCTCCACCCTCCTCTCCCC
AGTGGCTGCAGCTGACTATGTATTCCTGAACTGGAGCCCCAGACCCGCCCCCTCACCGCCTTGC
TATAGGAGTCACCTGGAGCCTCGGTCTCTCCCAGGGCCGATCCTGTCTGCAGTCACATCTTTGT
GGGGCCTGCTGACCCACAAGCTTTTGTTCTCTCAGTACTTGTTACCCAGCTTCTCAACATCCAG
GGCCCAATATGCCCTGCCTGGAGTTCCCCCTGGCTCTAGGACACTCTAACAAGCTCTGTCCAAG
GGTCTCCCCATTCCCACCAGGCCCTGCACACACCCACTCTGTAACCTCTCCCCTGTACCTGTGC
CAAGCCTAGCACTTGTGATGCTTCCATGCCCCGAGGGCCCTCTCTCAGTTCTGGGAGGATGACT
CCAGTCCCTGCACGCCCTGGCACACCCTTCACGGTTGCCACCCAGGCGGCCAAGCTCCAGACCG
TGCCAGACCCAGGTGCCCCAGTGCCTTTGTCTATATTCTGCTCCCAGCCTGCCAGGCCCAGGAG
GAAATAAACATGCCCCAGTTGCTGATCTCTA

hide sequence

RefSeq Acc Id:

XM_057300538 ⟹ XP_057156521

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	42,142,035 - 42,152,045 (+)	NCBI
NHGRI_mPanPan1	19	44,125,580 - 44,135,599 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003816161	(Get FASTA)	NCBI Sequence Viewer
	XP_008967369	(Get FASTA)	NCBI Sequence Viewer
	XP_008967370	(Get FASTA)	NCBI Sequence Viewer
	XP_057156521	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000032148
	ENSPPAP00000032148.1
	ENSPPAP00000032157
	ENSPPAP00000032157.1
	ENSPPAP00000032165.1
	ENSPPAP00000032166.1
	ENSPPAP00000032175.1

RefSeq Acc Id:	XP_008967369 ⟸ XM_008969121
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BR52 (UniProtKB/TrEMBL), A0A2R9BUP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGTAMRILGGVISAI SEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPD LKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGA FQAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDRDGTGQIQVNIQEV RTPILGYGCLGGPHPSALHTSSELQSPPSYFASSPWVRAKGLVLLGFPVLTLHPPLPSGCS hide sequence

RefSeq Acc Id:	XP_003816161 ⟸ XM_003816113
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BR55 (UniProtKB/TrEMBL), A0A2R9BUP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGTAMRILGGVISAI SEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPD LKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGA FQAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDRDGTGQIQVNIQEW LQLTMYS hide sequence

RefSeq Acc Id:	XP_008967370 ⟸ XM_008969122
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BR52 (UniProtKB/TrEMBL), A0A2R9BUP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGTAMRILGGVISAI SEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPD LKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGA FQAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDRDGTGQIQVNIQEV RTPILGYGCLGGPHPSALHTSSELQSPPSYFASSPWVRAKGLVLLGFPVLTLHPPLPSGCS hide sequence

RefSeq Acc Id:

ENSPPAP00000032148 ⟸ ENSPPAT00000055014

RefSeq Acc Id:

ENSPPAP00000032157 ⟸ ENSPPAT00000055023

RefSeq Acc Id:

ENSPPAP00000032165 ⟸ ENSPPAT00000055031

RefSeq Acc Id:

ENSPPAP00000032166 ⟸ ENSPPAT00000055032

RefSeq Acc Id:

ENSPPAP00000032175 ⟸ ENSPPAT00000055041

RefSeq Acc Id:	XP_057156521 ⟸ XM_057300538
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BR55 (UniProtKB/TrEMBL)

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000038912	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000055014.1	UniProtKB/TrEMBL
	ENSPPAT00000055023.1	UniProtKB/TrEMBL
	ENSPPAT00000055031.1	UniProtKB/TrEMBL
	ENSPPAT00000055032.1	UniProtKB/TrEMBL
	ENSPPAT00000055041.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
KEGG Report	pps:100987448	UniProtKB/TrEMBL
NCBI Gene	CAPNS1	ENTREZGENE
PANTHER	CALPAIN, SMALL SUBUNIT 1 A-RELATED	UniProtKB/TrEMBL
	CALPAIN, SMALL SUBUNIT 1 A-RELATED	UniProtKB/TrEMBL
	PTHR46735:SF1	UniProtKB/TrEMBL
Pfam	EF-hand_8	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A2R9BR52	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BR55	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BRV4_PANPA	UniProtKB/TrEMBL
	A0A2R9BUP0	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BUP9_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD