BNC2 (basonuclin zinc finger protein 2) - Rat Genome Database

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Gene: BNC2 (basonuclin zinc finger protein 2) Pan paniscus
Analyze
Symbol: BNC2
Name: basonuclin zinc finger protein 2 (Ensembl:basonuclin 2)
RGD ID: 11961110
Description: ENCODES a protein that exhibits DNA binding (inferred); rDNA binding (inferred); INVOLVED IN endochondral bone growth (ortholog); mesenchyme development (ortholog); regulation of apoptotic process (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); cleft palate (ortholog); Congenital Lower Urinary Tract Obstruction (ortholog); FOUND IN chromatin (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: basonuclin 2; zinc finger protein basonuclin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19107,688,922 - 108,143,180 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0916,230,704 - 16,684,863 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1916,723,916 - 17,182,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl916,733,344 - 17,182,609 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BNC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19107,688,922 - 108,143,180 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0916,230,704 - 16,684,863 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1916,723,916 - 17,182,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl916,733,344 - 17,182,609 (-)Ensemblpanpan1.1panPan2
BNC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38916,409,503 - 16,870,670 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl916,409,503 - 16,870,843 (-)EnsemblGRCh38hg38GRCh38
GRCh37916,409,501 - 16,870,668 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36916,399,501 - 16,860,786 (-)NCBINCBI36Build 36hg18NCBI36
Build 34916,406,401 - 16,717,995NCBI
Celera916,336,475 - 16,798,503 (-)NCBICelera
Cytogenetic Map9p22.3-p22.2NCBI
HuRef916,372,931 - 16,833,878 (-)NCBIHuRef
CHM1_1916,409,018 - 16,870,617 (-)NCBICHM1_1
T2T-CHM13v2.0916,421,369 - 16,882,518 (-)NCBIT2T-CHM13v2.0
Bnc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39484,185,041 - 84,593,236 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl484,193,332 - 84,593,512 (-)EnsemblGRCm39 Ensembl
GRCm38484,266,804 - 84,676,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl484,275,095 - 84,675,275 (-)EnsemblGRCm38mm10GRCm38
MGSCv37483,918,446 - 84,320,990 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36483,746,326 - 84,017,564 (-)NCBIMGSCv36mm8
Celera482,782,012 - 83,066,290 (-)NCBICelera
Cytogenetic Map4C3- C4NCBI
cM Map439.76NCBI
Bnc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85103,724,934 - 104,061,890 (-)NCBIGRCr8
mRatBN7.2598,679,071 - 99,016,044 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl598,687,410 - 99,079,426 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5101,074,691 - 101,403,204 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05102,862,248 - 103,192,114 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05102,885,556 - 103,214,070 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05102,407,508 - 102,807,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5102,415,847 - 102,786,331 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05106,423,637 - 106,815,661 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45103,143,810 - 103,474,243 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15103,149,739 - 103,415,875 (-)NCBI
Celera597,217,719 - 97,546,321 (-)NCBICelera
Cytogenetic Map5q31NCBI
Bnc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543419,165,912 - 19,515,720 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543419,156,746 - 19,568,983 (-)NCBIChiLan1.0ChiLan1.0
BNC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11136,511,581 - 36,950,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1136,514,166 - 36,950,679 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1135,156,775 - 35,602,037 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01137,416,595 - 37,862,856 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1137,425,576 - 37,862,888 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11136,110,194 - 36,556,402 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01135,907,504 - 36,353,053 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01136,560,617 - 37,005,520 (-)NCBIUU_Cfam_GSD_1.0
Bnc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947151,276,469 - 151,626,257 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936771747,496 - 1,036,122 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936771747,487 - 1,036,546 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BNC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1205,925,091 - 206,372,121 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11205,925,079 - 206,380,911 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21229,662,421 - 230,112,989 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BNC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11262,775,827 - 63,233,077 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1262,777,045 - 63,223,696 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603850,935,893 - 51,394,839 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bnc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473620,491,388 - 20,916,729 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473620,488,854 - 20,917,614 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008976189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008976190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008976191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008976192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008976198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008976199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034967205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034967206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034967207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055092098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055092099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000051162   ⟹   ENSPPAP00000028316
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl916,733,344 - 17,182,609 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051168   ⟹   ENSPPAP00000028322
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl916,749,379 - 16,753,522 (-)Ensembl
RefSeq Acc Id: XM_008976190   ⟹   XP_008974438
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
NHGRI_mPanPan19107,688,929 - 108,143,180 (+)NCBI
Mhudiblu_PPA_v0916,230,704 - 16,684,825 (-)NCBI
PanPan1.1916,723,916 - 17,182,738 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008976192   ⟹   XP_008974440
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
NHGRI_mPanPan19107,688,927 - 108,143,180 (+)NCBI
Mhudiblu_PPA_v0916,230,704 - 16,684,824 (-)NCBI
PanPan1.1916,723,916 - 17,182,804 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055092098   ⟹   XP_054948073
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
NHGRI_mPanPan19107,688,937 - 108,143,180 (+)NCBI
RefSeq Acc Id: XM_055092099   ⟹   XP_054948074
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,134,019 (+)NCBI
NHGRI_mPanPan19107,688,922 - 108,140,080 (+)NCBI
RefSeq Acc Id: XM_063594470   ⟹   XP_063450540
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594471   ⟹   XP_063450541
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594472   ⟹   XP_063450542
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594473   ⟹   XP_063450543
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594474   ⟹   XP_063450544
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594475   ⟹   XP_063450545
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594476   ⟹   XP_063450546
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594477   ⟹   XP_063450547
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594478   ⟹   XP_063450548
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,723,161 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594479   ⟹   XP_063450549
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,723,162 - 108,144,097 (+)NCBI
RefSeq Acc Id: XM_063594480   ⟹   XP_063450550
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211107,682,257 - 108,132,301 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008974440   ⟸   XM_008976192
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_008974438   ⟸   XM_008976190
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSPPAP00000028316   ⟸   ENSPPAT00000051162
RefSeq Acc Id: ENSPPAP00000028322   ⟸   ENSPPAT00000051168
RefSeq Acc Id: XP_054948074   ⟸   XM_055092099
- Peptide Label: isoform X15
RefSeq Acc Id: XP_054948073   ⟸   XM_055092098
- Peptide Label: isoform X6
- UniProtKB: A0A2R9BNU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063450540   ⟸   XM_063594470
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063450541   ⟸   XM_063594471
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063450542   ⟸   XM_063594472
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063450546   ⟸   XM_063594476
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063450547   ⟸   XM_063594477
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063450544   ⟸   XM_063594474
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063450543   ⟸   XM_063594473
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063450545   ⟸   XM_063594475
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063450550   ⟸   XM_063594480
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063450548   ⟸   XM_063594478
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063450549   ⟸   XM_063594479
- Peptide Label: isoform X13
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037205 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051162.1 UniProtKB/TrEMBL
  ENSPPAT00000051168.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Disconnected-like UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene BNC2 ENTREZGENE
PANTHER PTHR15021 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN BASONUCLIN-2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9BJ43_PANPA UniProtKB/TrEMBL
  A0A2R9BNU5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-13 BNC2  basonuclin zinc finger protein 2  BNC2  basonuclin 2  Symbol and/or name change 5135510 APPROVED