EIF3F (eukaryotic translation initiation factor 3 subunit F) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: EIF3F (eukaryotic translation initiation factor 3 subunit F) Pan paniscus
Analyze
Symbol: EIF3F
Name: eukaryotic translation initiation factor 3 subunit F
RGD ID: 11961047
Description: ENCODES a protein that exhibits translation initiation factor activity (ortholog); INVOLVED IN cytoplasmic translational initiation (inferred); formation of cytoplasmic translation initiation complex (inferred); IRES-dependent viral translational initiation (inferred); PARTICIPATES IN translation initiation pathway; ASSOCIATED WITH autosomal recessive intellectual developmental disorder 67 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN eukaryotic translation initiation factor 3 complex (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2910,411,050 - 10,420,006 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11110,373,219 - 10,382,175 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0118,104,384 - 8,113,624 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1117,834,118 - 7,859,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl117,850,728 - 7,859,981 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EIF3F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2910,411,050 - 10,420,006 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11110,373,219 - 10,382,175 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0118,104,384 - 8,113,624 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1117,834,118 - 7,859,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl117,850,728 - 7,859,981 (+)Ensemblpanpan1.1panPan2
EIF3F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38117,987,337 - 8,001,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl117,970,251 - 8,001,862 (+)EnsemblGRCh38hg38GRCh38
GRCh37118,008,884 - 8,023,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,965,443 - 7,974,294 (+)NCBINCBI36Build 36hg18NCBI36
Build 34117,965,469 - 7,974,287NCBI
Celera118,124,565 - 8,133,440 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef117,675,616 - 7,684,471 (+)NCBIHuRef
CHM1_1118,007,872 - 8,016,713 (+)NCBICHM1_1
T2T-CHM13v2.0118,066,510 - 8,081,027 (+)NCBIT2T-CHM13v2.0
Eif3f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397108,533,622 - 108,541,149 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7108,533,624 - 108,542,158 (+)EnsemblGRCm39 Ensembl
GRCm387108,934,415 - 108,941,942 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7108,934,417 - 108,942,951 (+)EnsemblGRCm38mm10GRCm38
MGSCv377116,077,929 - 116,085,456 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367108,725,593 - 108,732,866 (+)NCBIMGSCv36mm8
Celera7108,910,871 - 108,918,398 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
Eif3f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,369,062 - 172,378,043 (+)NCBIGRCr8
mRatBN7.21162,934,220 - 162,943,204 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,934,212 - 162,943,204 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,275,990 - 171,284,948 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,461,984 - 178,470,941 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,134,237 - 171,143,197 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01173,532,826 - 173,541,806 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,532,803 - 173,541,847 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01180,523,029 - 180,532,009 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,398,519 - 166,407,783 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11166,509,415 - 166,518,431 (-)NCBI
Celera1160,840,884 - 160,849,844 (+)NCBICelera
Cytogenetic Map1q33NCBI
Eif3f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541423,804,705 - 23,817,044 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541423,805,406 - 23,812,776 (+)NCBIChiLan1.0ChiLan1.0
EIF3F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12131,514,930 - 31,525,651 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2131,517,777 - 31,525,644 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,087,628 - 31,094,967 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02132,392,321 - 32,399,667 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2132,392,333 - 32,401,352 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12131,662,107 - 31,669,456 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02131,828,280 - 31,835,618 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,122,018 - 32,129,374 (+)NCBIUU_Cfam_GSD_1.0
Eif3f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,896,443 - 53,904,135 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365289,928,470 - 9,938,219 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365289,930,419 - 9,938,102 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF3F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl91,291,661 - 1,297,972 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.191,291,660 - 1,297,987 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EIF3F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,804,635 - 56,814,079 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl156,799,838 - 56,813,650 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038154,531,770 - 154,541,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif3f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624766177,531 - 184,840 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034932079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000041109   ⟹   ENSPPAP00000018378
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl117,850,728 - 7,859,981 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000041116   ⟹   ENSPPAP00000018385
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl117,851,190 - 7,851,924 (+)Ensembl
RefSeq Acc Id: XM_034932079   ⟹   XP_034787970
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2910,411,050 - 10,420,006 (+)NCBI
NHGRI_mPanPan11110,373,219 - 10,382,175 (+)NCBI
Mhudiblu_PPA_v0118,104,384 - 8,113,624 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034787970 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018378.1
  ENSPPAP00000018385.1
Reference Protein Sequences
RefSeq Acc Id: XP_034787970   ⟸   XM_034932079
- UniProtKB: A0A2R9AMK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000018378   ⟸   ENSPPAT00000041109
RefSeq Acc Id: ENSPPAP00000018385   ⟸   ENSPPAT00000041116
Protein Domains
MPN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032324 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041109.1 UniProtKB/TrEMBL
  ENSPPAT00000041116.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/TrEMBL
InterPro eIF3f UniProtKB/TrEMBL
  JAMM/MPN+_dom UniProtKB/TrEMBL
  MPN UniProtKB/TrEMBL
  Rpn11/EIF3F_C UniProtKB/TrEMBL
NCBI Gene EIF3F ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED UniProtKB/TrEMBL
Pfam JAB UniProtKB/TrEMBL
  MitMem_reg UniProtKB/TrEMBL
PROSITE MPN UniProtKB/TrEMBL
SMART JAB_MPN UniProtKB/TrEMBL
UniProt A0A2R9AMK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9ARI7_PANPA UniProtKB/TrEMBL