SSNA1 (SS nuclear autoantigen 1) - Rat Genome Database

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Gene: SSNA1 (SS nuclear autoantigen 1) Pan paniscus
Analyze
Symbol: SSNA1
Name: SS nuclear autoantigen 1
RGD ID: 11960837
Description: ENCODES a protein that exhibits identical protein binding (inferred); microtubule binding (inferred); INVOLVED IN intraciliary transport (ortholog); receptor clustering (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN axon (inferred); axoneme (inferred); centriole (inferred)
Type: protein-coding
Previously known as: microtubule nucleation factor SSNA1; Sjoegren syndrome nuclear autoantigen 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan192,211,584 - 2,213,367 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,248,263 - 108,250,002 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,217,653 - 137,219,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,217,653 - 137,219,406 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SSNA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan192,211,584 - 2,213,367 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,248,263 - 108,250,002 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,217,653 - 137,219,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,217,653 - 137,219,406 (+)Ensemblpanpan1.1panPan2
SSNA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,188,676 - 137,190,366 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,188,660 - 137,190,370 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,083,128 - 140,084,818 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,202,954 - 139,204,639 (+)NCBINCBI36Build 36hg18NCBI36
Build 349137,358,969 - 137,360,652NCBI
Celera9110,597,085 - 110,598,853 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,543,071 - 109,544,839 (+)NCBIHuRef
CHM1_19140,231,743 - 140,233,511 (+)NCBICHM1_1
T2T-CHM13v2.09149,426,339 - 149,428,029 (+)NCBIT2T-CHM13v2.0
Ssna1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,161,051 - 25,162,430 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,161,051 - 25,162,450 (-)EnsemblGRCm39 Ensembl
GRCm38225,271,039 - 25,272,418 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,271,039 - 25,272,438 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,126,559 - 25,127,938 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,087,542 - 25,094,421 (-)NCBIMGSCv36mm8
Celera224,998,730 - 25,000,109 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.12NCBI
Ssna1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,483,107 - 28,484,571 (-)NCBIGRCr8
mRatBN7.238,084,949 - 8,086,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,084,974 - 8,086,356 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,189,448 - 11,190,912 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,775,678 - 19,777,142 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,965,521 - 17,966,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,489,017 - 2,490,481 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,489,042 - 2,490,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,470,451 - 2,471,889 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,435,747 - 3,436,469 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.133,435,392 - 3,436,283 (-)NCBI
Celera32,911,494 - 2,912,958 (-)NCBICelera
Cytogenetic Map3p13NCBI
Ssna1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,194,308 - 5,195,721 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,194,308 - 5,195,721 (+)NCBIChiLan1.0ChiLan1.0
SSNA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,474,132 - 48,475,731 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,474,139 - 48,475,691 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,664,954 - 47,666,564 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,339,809 - 49,341,406 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,339,811 - 49,341,350 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,116,208 - 48,117,818 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,415,021 - 48,416,631 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,462,180 - 48,463,790 (-)NCBIUU_Cfam_GSD_1.0
Ssna1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,577,630 - 202,579,125 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669795,950 - 797,422 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669795,929 - 797,422 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSNA1
(Sus scrofa - pig)		 No map positions available.
SSNA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112999,142 - 1,000,877 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12999,327 - 1,000,831 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,304,376 - 4,306,111 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssna1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760759,469 - 760,797 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760759,471 - 760,797 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003817002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055117338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000028532   ⟹   ENSPPAP00000006811
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9137,217,653 - 137,219,406 (+)Ensembl
RefSeq Acc Id: XM_055117338   ⟹   XP_054973313
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan192,211,584 - 2,213,367 (-)NCBI
Protein Sequences
Ensembl Protein ENSPPAP00000006811.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000006811   ⟸   ENSPPAT00000028532
RefSeq Acc Id: XP_054973313   ⟸   XM_055117338


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025725 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028532.1 UniProtKB/TrEMBL
InterPro SSNA1_fam UniProtKB/TrEMBL
KEGG Report pps:100990725 UniProtKB/TrEMBL
NCBI Gene SSNA1 ENTREZGENE
PANTHER PTHR28661 UniProtKB/TrEMBL
  SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 UniProtKB/TrEMBL
UniProt A0A2R8ZPE1_PANPA UniProtKB/TrEMBL