TMEM123 (transmembrane protein 123) - Rat Genome Database

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Gene: TMEM123 (transmembrane protein 123) Pan paniscus
Analyze
Symbol: TMEM123
Name: transmembrane protein 123
RGD ID: 11958187
Description: ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); ataxia telangiectasia (ortholog); COVID-19 (ortholog); FOUND IN cytoplasmic vesicle (inferred); external side of plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: porimin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29103,195,323 - 103,251,788 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111104,283,691 - 104,340,392 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01197,342,669 - 97,399,342 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111100,835,988 - 100,892,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11100,835,988 - 100,892,618 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM123
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29103,195,323 - 103,251,788 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111104,283,691 - 104,340,392 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01197,342,669 - 97,399,342 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111100,835,988 - 100,892,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11100,835,988 - 100,892,618 (-)Ensemblpanpan1.1panPan2
TMEM123
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811102,396,332 - 102,452,765 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11102,396,332 - 102,470,384 (-)EnsemblGRCh38hg38GRCh38
GRCh3711102,267,063 - 102,323,496 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611101,772,266 - 101,828,985 (-)NCBINCBI36Build 36hg18NCBI36
Celera1199,428,614 - 99,485,334 (-)NCBICelera
Cytogenetic Map11q22.2NCBI
HuRef1198,193,581 - 98,250,555 (-)NCBIHuRef
CHM1_111102,150,071 - 102,206,782 (-)NCBICHM1_1
T2T-CHM13v2.011102,398,458 - 102,454,892 (-)NCBIT2T-CHM13v2.0
Tmem123
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3997,764,078 - 7,794,334 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl97,764,042 - 7,794,334 (+)EnsemblGRCm39 Ensembl
GRCm3897,764,077 - 7,794,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl97,764,041 - 7,794,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv3797,764,077 - 7,794,333 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3697,764,649 - 7,794,854 (+)NCBIMGSCv36mm8
Celera95,156,034 - 5,186,291 (+)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.46NCBI
Tmem123
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8813,206,907 - 13,237,069 (+)NCBIGRCr8
mRatBN7.284,922,077 - 4,952,228 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl84,922,098 - 4,952,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx88,883,450 - 8,913,390 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.087,181,230 - 7,211,169 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.085,181,742 - 5,211,908 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.085,967,373 - 5,997,387 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl85,967,463 - 5,997,383 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.085,969,112 - 5,999,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.484,604,130 - 4,632,932 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.184,604,129 - 4,632,932 (+)NCBI
Celera86,478,699 - 6,512,657 (+)NCBICelera
Cytogenetic Map8q11NCBI
Tmem123
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554125,690,988 - 5,741,109 (-)NCBIChiLan1.0ChiLan1.0
TMEM123
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1529,223,682 - 29,284,076 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha529,174,439 - 29,233,164 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0529,277,988 - 29,336,816 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl529,277,955 - 29,336,818 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1529,312,550 - 29,370,582 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0529,192,177 - 29,251,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0529,367,494 - 29,425,743 (+)NCBIUU_Cfam_GSD_1.0
Tmem123
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494786,040,980 - 86,102,981 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365515,447,563 - 5,495,530 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365515,433,528 - 5,495,529 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM123
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl933,084,822 - 33,160,311 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1933,084,820 - 33,160,346 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2937,033,047 - 37,080,716 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM123
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1193,767,359 - 93,822,539 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl193,765,365 - 93,822,806 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604332,041,026 - 32,096,611 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003828384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000058579   ⟹   ENSPPAP00000035690
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11100,835,988 - 100,892,618 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000058584   ⟹   ENSPPAP00000035695
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11100,838,518 - 100,892,189 (-)Ensembl
RefSeq Acc Id: XM_003828384   ⟹   XP_003828432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29103,195,323 - 103,251,788 (-)NCBI
NHGRI_mPanPan111104,283,691 - 104,340,392 (-)NCBI
Mhudiblu_PPA_v01197,342,669 - 97,399,342 (-)NCBI
PanPan1.111100,835,988 - 100,892,618 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003828432 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000035690.1
  ENSPPAP00000035695.1
Reference Protein Sequences
RefSeq Acc Id: XP_003828432   ⟸   XM_003828384
- UniProtKB: A0A2R9CBF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000035690   ⟸   ENSPPAT00000058579
RefSeq Acc Id: ENSPPAP00000035695   ⟸   ENSPPAT00000058584


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040642 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058579.1 UniProtKB/TrEMBL
  ENSPPAT00000058584.1 UniProtKB/TrEMBL
InterPro CD164_MGC24 UniProtKB/TrEMBL
KEGG Report pps:100969709 UniProtKB/TrEMBL
NCBI Gene TMEM123 ENTREZGENE
PANTHER PORIMIN UniProtKB/TrEMBL
  PTHR11337 UniProtKB/TrEMBL
Pfam MGC-24 UniProtKB/TrEMBL
UniProt A0A2R9CBF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CBF7_PANPA UniProtKB/TrEMBL