ASCL2 (achaete-scute family bHLH transcription factor 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ASCL2 (achaete-scute family bHLH transcription factor 2) Pan paniscus
Analyze
Symbol: ASCL2
Name: achaete-scute family bHLH transcription factor 2
RGD ID: 11955964
Description: ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cell differentiation (ortholog); chorionic trophoblast cell development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); Colonic Neoplasms (ortholog); delta beta-thalassemia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: achaete-scute homolog 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,690,960 - 4,693,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,902,697 - 3,905,281 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,305,497 - 2,308,080 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,333,727 - 2,335,964 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ASCL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,690,960 - 4,693,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,902,697 - 3,905,281 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,305,497 - 2,308,080 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,333,727 - 2,335,964 (-)NCBIpanpan1.1PanPan1.1panPan2
ASCL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,268,498 - 2,270,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,268,498 - 2,270,588 (-)EnsemblGRCh38hg38GRCh38
GRCh37112,289,728 - 2,291,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,246,304 - 2,248,758 (-)NCBINCBI36Build 36hg18NCBI36
Build 34112,246,304 - 2,248,758NCBI
Celera112,325,551 - 2,328,006 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef112,079,884 - 2,082,454 (-)NCBIHuRef
CHM1_1112,288,463 - 2,290,917 (-)NCBICHM1_1
T2T-CHM13v2.0112,357,957 - 2,360,047 (-)NCBIT2T-CHM13v2.0
Ascl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397142,520,559 - 142,523,001 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7142,520,566 - 142,523,001 (-)EnsemblGRCm39 Ensembl
GRCm387142,966,822 - 142,969,264 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,966,829 - 142,969,264 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,152,727 - 150,155,169 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,776,216 - 142,778,617 (-)NCBIMGSCv36mm8
Celera7142,722,445 - 142,724,887 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.08NCBI
Ascl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81207,578,447 - 207,665,126 (-)NCBIGRCr8
mRatBN7.21198,148,999 - 198,151,406 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,148,999 - 198,151,406 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1206,527,767 - 206,530,174 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,614,646 - 213,617,053 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01206,288,807 - 206,291,214 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,154,002 - 216,156,409 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,154,002 - 216,156,409 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,012,687 - 223,015,038 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,242,130 - 203,244,480 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11203,395,581 - 203,397,933 (-)NCBI
Celera1195,719,321 - 195,721,728 (-)NCBICelera
Cytogenetic Map1q41NCBI
Ascl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542214,051,140 - 14,053,521 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542214,051,140 - 14,053,521 (-)NCBIChiLan1.0ChiLan1.0
ASCL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,394,034 - 46,396,723 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,395,391 - 46,395,975 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,003,875 - 45,006,062 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,073,718 - 47,075,905 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,074,942 - 47,075,526 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,521,885 - 46,524,071 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,102,262 - 46,104,449 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,849,059 - 46,851,246 (-)NCBIUU_Cfam_GSD_1.0
Ascl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049472,624,245 - 2,626,271 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936794568,567 - 569,139 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936794567,462 - 569,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASCL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,558,459 - 1,560,112 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,558,459 - 1,560,112 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ASCL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112,075,629 - 2,080,462 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12,076,851 - 2,077,432 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,278,892 - 99,281,314 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ascl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,107,159 - 15,109,191 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,107,157 - 15,111,696 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034931945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034931945   ⟹   XP_034787836
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v294,690,960 - 4,693,544 (-)NCBI
NHGRI_mPanPan1113,902,697 - 3,905,281 (-)NCBI
Mhudiblu_PPA_v0112,305,497 - 2,308,080 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034787836 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_034787836   ⟸   XM_034931945


Additional Information

Database Acc Id Source(s)
NCBI Gene ASCL2 ENTREZGENE