TENM1 (teneurin transmembrane protein 1) - Rat Genome Database

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Gene: TENM1 (teneurin transmembrane protein 1) Pan paniscus
Analyze
Symbol: TENM1
Name: teneurin transmembrane protein 1
RGD ID: 11955716
Description: ENCODES a protein that exhibits cell adhesion molecule binding (inferred); identical protein binding (inferred); protein heterodimerization activity (inferred); INVOLVED IN positive regulation of actin filament polymerization (ortholog); positive regulation of filopodium assembly (ortholog); positive regulation of peptidyl-serine phosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); sensorineural hearing loss (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103786865; odz, odd Oz/ten-m homolog 1; ODZ1; teneurin-1; uncharacterized LOC103786865
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X123,850,582 - 124,185,038 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X123,853,195 - 124,188,652 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X113,568,341 - 114,399,131 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X123,743,454 - 124,106,221 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX123,742,330 - 124,333,000 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TENM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X123,850,582 - 124,185,038 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X123,853,195 - 124,188,652 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X113,568,341 - 114,399,131 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X123,743,454 - 124,106,221 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX123,742,330 - 124,333,000 (-)Ensemblpanpan1.1panPan2
TENM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X124,375,903 - 125,204,312 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX124,375,903 - 125,204,312 (-)EnsemblGRCh38hg38GRCh38
GRCh37X123,509,753 - 124,338,161 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X123,339,504 - 123,925,347 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X123,239,869 - 123,823,201NCBI
CeleraX123,894,317 - 124,482,247 (-)NCBICelera
Cytogenetic MapXq25NCBI
HuRefX112,890,871 - 113,481,233 (-)NCBIHuRef
CHM1_1X123,420,772 - 124,008,695 (-)NCBICHM1_1
T2T-CHM13v2.0X122,686,274 - 123,514,783 (-)NCBIT2T-CHM13v2.0
Tenm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X41,616,743 - 42,518,045 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX41,616,743 - 42,518,003 (-)EnsemblGRCm39 Ensembl
GRCm38X42,527,866 - 43,429,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX42,527,866 - 43,429,126 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X39,885,568 - 40,627,963 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X38,777,018 - 39,519,413 (-)NCBIMGSCv36mm8
CeleraX30,106,289 - 30,816,175 (-)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX23.21NCBI
Tenm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X126,265,968 - 127,155,737 (-)NCBIGRCr8
mRatBN7.2X121,400,466 - 122,289,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX121,403,649 - 122,290,207 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X129,034,755 - 129,336,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0X128,923,951 - 128,951,520 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X129,005,588 - 129,870,335 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X1,895,286 - 2,529,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX120,513,461 - 120,912,284 (-)NCBICelera
Cytogenetic MapXq35NCBI
Tenm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554739,770,364 - 10,337,379 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554739,557,822 - 10,342,007 (+)NCBIChiLan1.0ChiLan1.0
TENM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X95,766,173 - 96,565,995 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX95,769,881 - 96,550,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX81,834,945 - 82,631,500 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X97,552,681 - 98,343,304 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX97,554,737 - 98,327,487 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X94,983,680 - 95,773,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X96,739,997 - 97,530,092 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X96,529,991 - 97,320,597 (-)NCBIUU_Cfam_GSD_1.0
Tenm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X94,732,645 - 95,513,084 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364795,710,613 - 6,250,232 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364795,603,944 - 6,254,846 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX101,856,267 - 102,641,186 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X101,853,340 - 102,641,299 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X116,722,711 - 117,279,311 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TENM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606537,115,445 - 37,496,618 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tenm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247973,151,434 - 3,732,909 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247973,146,824 - 3,732,968 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000019679   ⟹   ENSPPAP00000004244
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX123,742,330 - 124,106,221 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000019719   ⟹   ENSPPAP00000004254
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX123,746,957 - 124,333,000 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000019727   ⟹   ENSPPAP00000004260
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX123,746,957 - 124,333,000 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000019733   ⟹   ENSPPAP00000004262
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX123,746,957 - 124,107,108 (-)Ensembl
RefSeq Acc Id: XM_034950131   ⟹   XP_034806022
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X123,850,582 - 124,185,038 (-)NCBI
NHGRI_mPanPan1X123,853,195 - 124,188,652 (-)NCBI
Mhudiblu_PPA_v0X113,568,341 - 114,399,131 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034806022 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000004244.1
  ENSPPAP00000004254.1
  ENSPPAP00000004260.1
  ENSPPAP00000004262.1
Reference Protein Sequences
RefSeq Acc Id: XP_034806022   ⟸   XM_034950131
- UniProtKB: A0A2R8ZGY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000004260   ⟸   ENSPPAT00000019727
RefSeq Acc Id: ENSPPAP00000004254   ⟸   ENSPPAT00000019719
RefSeq Acc Id: ENSPPAP00000004262   ⟸   ENSPPAT00000019733
RefSeq Acc Id: ENSPPAP00000004244   ⟸   ENSPPAT00000019679
Protein Domains
EGF-like   Teneurin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000017669 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000019679.1 UniProtKB/TrEMBL
  ENSPPAT00000019719.1 UniProtKB/TrEMBL
  ENSPPAT00000019727.1 UniProtKB/TrEMBL
  ENSPPAT00000019733.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  RHS repeat-associated core UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  IPR006530 UniProtKB/TrEMBL
  RHS_repeat UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Tox-GHH_dom UniProtKB/TrEMBL
KEGG Report pps:100990979 UniProtKB/TrEMBL
NCBI Gene TENM1 ENTREZGENE
PANTHER TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE UniProtKB/TrEMBL
  TENEURIN-1 UniProtKB/TrEMBL
Pfam RHS_repeat UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Tox-GHH UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  TENEURIN_N UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
Superfamily-SCOP Calcium-dependent phosphotriesterase UniProtKB/TrEMBL
  EGF/Laminin UniProtKB/TrEMBL
  NHL repeat UniProtKB/TrEMBL
UniProt A0A2R8ZGY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZGZ4_PANPA UniProtKB/TrEMBL
  A0A2R8ZH02_PANPA UniProtKB/TrEMBL
  A0A2R8ZK71_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 TENM1  teneurin transmembrane protein 1  LOC103786865  uncharacterized LOC103786865  Data merged from RGD:11812400 737654 PROVISIONAL