SEBOX (SEBOX homeobox) - Rat Genome Database

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Gene: SEBOX (SEBOX homeobox) Pan paniscus
Analyze
Symbol: SEBOX
Name: SEBOX homeobox
RGD ID: 11955470
Description: INVOLVED IN embryo development ending in birth or egg hatching (ortholog); oogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein SEBOX
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21936,091,865 - 36,097,416 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,972,244 - 37,975,553 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,408,417 - 28,410,456 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,911,695 - 28,912,596 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SEBOX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21936,091,865 - 36,097,416 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,972,244 - 37,975,553 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,408,417 - 28,410,456 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,911,695 - 28,912,596 (+)NCBIpanpan1.1PanPan1.1panPan2
SEBOX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,363,506 - 28,365,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,363,506 - 28,365,199 (-)EnsemblGRCh38hg38GRCh38
GRCh371726,690,528 - 26,692,221 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,715,417 - 23,719,114 (-)NCBINCBI36Build 36hg18NCBI36
Celera1723,553,047 - 23,554,023 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1722,899,698 - 22,900,674 (-)NCBIHuRef
CHM1_11726,754,222 - 26,755,198 (-)NCBICHM1_1
T2T-CHM13v2.01729,305,357 - 29,307,050 (-)NCBIT2T-CHM13v2.0
Sebox
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,394,328 - 78,395,907 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,394,273 - 78,395,907 (+)EnsemblGRCm39 Ensembl
GRCm381178,503,513 - 78,505,081 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,503,447 - 78,505,081 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,317,015 - 78,318,583 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,319,708 - 78,321,276 (+)NCBIMGSCv36mm8
Celera1188,135,586 - 88,137,154 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Sebox
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,897,265 - 63,898,136 (+)NCBIGRCr8
mRatBN7.21063,399,215 - 63,400,086 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,399,165 - 63,400,606 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1068,031,858 - 68,032,729 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,537,189 - 67,538,060 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01063,006,717 - 63,007,588 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,771,370 - 65,774,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,772,443 - 65,773,314 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,869,667 - 65,871,914 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,613,725 - 64,614,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11064,627,347 - 64,628,219 (+)NCBI
Celera1062,375,790 - 62,376,661 (+)NCBICelera
Cytogenetic Map10q25NCBI
Sebox
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,769,063 - 4,769,953 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,768,121 - 4,770,611 (+)NCBIChiLan1.0ChiLan1.0
SEBOX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,614,770 - 42,616,412 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,614,941 - 42,630,864 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,771,703 - 41,773,168 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,433,952 - 43,435,417 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,434,650 - 43,439,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,218,182 - 42,219,647 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,509,401 - 42,510,866 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,586,467 - 42,587,932 (-)NCBIUU_Cfam_GSD_1.0
Sebox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,641,436 - 41,643,003 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,519,186 - 4,520,815 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,519,197 - 4,520,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEBOX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,646,443 - 44,648,425 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,646,731 - 44,648,981 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,559,018 - 46,561,367 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEBOX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,130,183 - 22,131,889 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1622,130,941 - 22,131,889 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,996,854 - 7,997,802 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sebox
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624786967,234 - 969,884 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003812668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003812668   ⟹   XP_003812716
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21936,091,865 - 36,097,416 (+)NCBI
NHGRI_mPanPan11737,972,244 - 37,975,553 (+)NCBI
Mhudiblu_PPA_v01728,408,417 - 28,410,456 (+)NCBI
PanPan1.11728,911,695 - 28,912,596 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003812716 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_003812716   ⟸   XM_003812668
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene SEBOX ENTREZGENE