CCDC112 (coiled-coil domain containing 112) - Rat Genome Database

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Gene: CCDC112 (coiled-coil domain containing 112) Pan paniscus
Analyze
Symbol: CCDC112
Name: coiled-coil domain containing 112
RGD ID: 11953353
Description: ASSOCIATED WITH autistic disorder (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN centriolar satellite (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 112
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24110,516,415 - 110,546,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15108,670,076 - 108,699,665 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05110,625,665 - 110,655,223 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15116,423,355 - 116,452,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5116,424,041 - 116,445,629 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CCDC112
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24110,516,415 - 110,546,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15108,670,076 - 108,699,665 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05110,625,665 - 110,655,223 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15116,423,355 - 116,452,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5116,424,041 - 116,445,629 (-)Ensemblpanpan1.1panPan2
CCDC112
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385115,267,190 - 115,296,654 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5115,267,190 - 115,296,693 (-)EnsemblGRCh38hg38GRCh38
GRCh375114,602,887 - 114,632,351 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365114,630,784 - 114,660,357 (-)NCBINCBI36Build 36hg18NCBI36
Celera5110,550,404 - 110,580,924 (-)NCBICelera
Cytogenetic Map5q22.3NCBI
HuRef5109,785,258 - 109,814,831 (-)NCBIHuRef
CHM1_15114,035,593 - 114,065,141 (-)NCBICHM1_1
T2T-CHM13v2.05115,780,514 - 115,809,978 (-)NCBIT2T-CHM13v2.0
Ccdc112
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391846,415,218 - 46,445,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1846,415,218 - 46,444,995 (-)EnsemblGRCm39 Ensembl
GRCm381846,282,151 - 46,311,950 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1846,282,151 - 46,311,928 (-)EnsemblGRCm38mm10GRCm38
MGSCv371846,441,805 - 46,471,582 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361846,407,482 - 46,439,579 (-)NCBIMGSCv36mm8
Celera1847,647,352 - 47,677,167 (-)NCBICelera
Cytogenetic Map18CNCBI
cM Map1824.48NCBI
Ccdc112
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81841,184,769 - 41,218,958 (-)NCBIGRCr8
mRatBN7.21838,998,139 - 39,032,329 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1838,998,139 - 39,032,329 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1841,031,378 - 41,065,564 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01841,733,599 - 41,767,787 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01839,526,711 - 39,560,895 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01840,220,855 - 40,254,845 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1840,220,855 - 40,254,845 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01839,874,113 - 39,908,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41840,455,513 - 40,489,699 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1837,257,095 - 37,288,122 (-)NCBICelera
Cytogenetic Map18q11NCBI
Ccdc112
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540835,052,985 - 35,069,035 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540835,052,985 - 35,069,032 (-)NCBIChiLan1.0ChiLan1.0
CCDC112
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1115,025,450 - 5,052,742 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl115,025,964 - 5,166,439 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha115,176,044 - 5,203,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0115,017,303 - 5,045,133 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl115,018,050 - 5,074,509 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1114,972,918 - 5,000,746 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0115,041,776 - 5,069,605 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0115,295,331 - 5,323,159 (-)NCBIUU_Cfam_GSD_1.0
Ccdc112
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213127,752,729 - 127,781,086 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936742453,452 - 481,879 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936742455,091 - 481,850 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC112
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2119,444,091 - 119,474,800 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12119,443,404 - 119,480,805 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22124,337,488 - 124,341,509 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC112
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12318,521,440 - 18,551,330 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2318,519,951 - 18,539,095 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603459,848,672 - 59,878,639 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc112
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247336,661,303 - 6,678,375 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000064927   ⟹   ENSPPAP00000041998
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5116,424,041 - 116,445,629 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064930   ⟹   ENSPPAP00000042001
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5116,424,041 - 116,435,905 (-)Ensembl
RefSeq Acc Id: XM_034960360   ⟹   XP_034816251
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24110,516,415 - 110,546,004 (-)NCBI
NHGRI_mPanPan15108,670,076 - 108,699,665 (-)NCBI
Mhudiblu_PPA_v05110,625,665 - 110,655,221 (-)NCBI
RefSeq Acc Id: XM_034960361   ⟹   XP_034816252
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24110,516,415 - 110,545,802 (-)NCBI
NHGRI_mPanPan15108,670,076 - 108,699,463 (-)NCBI
Mhudiblu_PPA_v05110,625,665 - 110,655,221 (-)NCBI
RefSeq Acc Id: XM_034960363   ⟹   XP_034816254
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24110,516,415 - 110,545,638 (-)NCBI
NHGRI_mPanPan15108,670,076 - 108,699,299 (-)NCBI
Mhudiblu_PPA_v05110,625,665 - 110,655,220 (-)NCBI
RefSeq Acc Id: XM_055112553   ⟹   XP_054968528
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24110,518,320 - 110,545,806 (-)NCBI
NHGRI_mPanPan15108,671,981 - 108,699,466 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034816251 (Get FASTA)   NCBI Sequence Viewer  
  XP_034816252 (Get FASTA)   NCBI Sequence Viewer  
  XP_034816254 (Get FASTA)   NCBI Sequence Viewer  
  XP_054968528 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000041998.1
  ENSPPAP00000042001.1
Reference Protein Sequences
RefSeq Acc Id: XP_034816252   ⟸   XM_034960361
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CJ62 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034816251   ⟸   XM_034960360
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CLV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034816254   ⟸   XM_034960363
- Peptide Label: isoform X4
- UniProtKB: A0A2R9CJ62 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000041998   ⟸   ENSPPAT00000064927
RefSeq Acc Id: ENSPPAP00000042001   ⟸   ENSPPAT00000064930
RefSeq Acc Id: XP_054968528   ⟸   XM_055112553
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043596 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064927.1 UniProtKB/TrEMBL
  ENSPPAT00000064930.1 UniProtKB/TrEMBL
InterPro CCDC148/CCDC112 UniProtKB/TrEMBL
NCBI Gene CCDC112 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 112 UniProtKB/TrEMBL
  PTHR21549 UniProtKB/TrEMBL
UniProt A0A2R9CJ62 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CLV6 ENTREZGENE, UniProtKB/TrEMBL