PPP1R13L (protein phosphatase 1 regulatory subunit 13 like) - Rat Genome Database

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Gene: PPP1R13L (protein phosphatase 1 regulatory subunit 13 like) Pan paniscus
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Symbol: PPP1R13L
Name: protein phosphatase 1 regulatory subunit 13 like
RGD ID: 11952401
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cardiac muscle contraction (ortholog); cardiac right ventricle morphogenesis (ortholog); embryonic camera-type eye development (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH ARRHYTHMOGENIC CARDIOMYOPATHY WITH VARIABLE ECTODERMAL ABNORMALITIES (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); autosomal recessive disease (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); intercellular bridge (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: relA-associated inhibitor; relA-associated inhibitor-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,540,765 - 51,567,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,408,236 - 53,438,745 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,328,814 - 42,355,088 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,915,901 - 50,950,837 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PPP1R13L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,540,765 - 51,567,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,408,236 - 53,438,745 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,328,814 - 42,355,088 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,915,901 - 50,950,837 (-)NCBIpanpan1.1PanPan1.1panPan2
PPP1R13L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,379,638 - 45,406,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,379,638 - 45,406,349 (-)EnsemblGRCh38hg38GRCh38
GRCh371945,882,896 - 45,909,619 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,574,736 - 50,600,129 (-)NCBINCBI36Build 36hg18NCBI36
Build 341950,574,735 - 50,588,265NCBI
Celera1942,688,993 - 42,715,713 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,315,788 - 42,339,935 (-)NCBIHuRef
CHM1_11945,886,191 - 45,912,899 (-)NCBICHM1_1
T2T-CHM13v2.01948,206,875 - 48,234,343 (-)NCBIT2T-CHM13v2.0
Ppp1r13l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,093,639 - 19,112,465 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,093,674 - 19,112,458 (+)EnsemblGRCm39 Ensembl
GRCm38719,359,724 - 19,378,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,359,749 - 19,378,533 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,946,565 - 19,963,882 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,519,768 - 18,536,530 (+)NCBIMGSCv36mm8
Celera716,767,970 - 16,785,307 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.62NCBI
Ppp1r13l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,139,000 - 88,158,714 (+)NCBIGRCr8
mRatBN7.2179,010,997 - 79,030,714 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,011,745 - 79,030,712 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0180,271,288 - 80,290,946 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,279,706 - 80,290,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,537,577 - 81,557,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,727,071 - 78,896,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,473,041 - 73,492,645 (+)NCBICelera
Cytogenetic Map1q21NCBI
Ppp1r13l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,372,259 - 2,389,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555552,373,088 - 2,390,973 (-)NCBIChiLan1.0ChiLan1.0
PPP1R13L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,149,393 - 110,166,029 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,156,749 - 110,165,915 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,633,886 - 109,650,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,682,231 - 110,698,908 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,682,994 - 110,698,895 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,357,858 - 110,374,530 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,992,017 - 110,008,687 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,861,328 - 110,878,230 (+)NCBIUU_Cfam_GSD_1.0
Ppp1r13l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,488,020 - 17,504,030 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,837,001 - 1,846,494 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,835,306 - 1,846,821 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R13L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,763,227 - 51,781,058 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,763,214 - 51,779,902 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PPP1R13L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,828,564 - 38,853,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607318,432,658 - 18,457,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r13l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249072,269,815 - 2,286,184 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249072,269,341 - 2,285,909 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034945614   ⟹   XP_034801505
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22051,540,765 - 51,567,201 (-)NCBI
NHGRI_mPanPan11953,408,236 - 53,438,745 (-)NCBI
Mhudiblu_PPA_v01942,328,814 - 42,355,088 (-)NCBI
RefSeq Acc Id: XM_055102957   ⟹   XP_054958932
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22051,540,765 - 51,566,130 (-)NCBI
NHGRI_mPanPan11953,408,236 - 53,437,681 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034801505 (Get FASTA)   NCBI Sequence Viewer  
  XP_054958932 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034801505   ⟸   XM_034945614
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054958932   ⟸   XM_055102957
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene PPP1R13L ENTREZGENE