RIF1 (replication timing regulatory factor 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RIF1 (replication timing regulatory factor 1) Pan paniscus
Analyze
Symbol: RIF1
Name: replication timing regulatory factor 1
RGD ID: 11951495
Description: INVOLVED IN cellular response to DNA damage stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); chromatin silencing at telomere (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH congenital muscular dystrophy (ortholog); Deglutition Disorders (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); condensed chromosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: RAP1 interacting factor homolog; telomere-associated protein RIF1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B155,985,960 - 156,109,726 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B155,985,960 - 156,052,926 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B38,721,658 - 38,818,488 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
RIF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B155,985,960 - 156,109,726 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B155,985,960 - 156,052,926 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B38,721,658 - 38,818,488 (+)NCBIMhudiblu_PPA_v0panPan3
RIF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2151,409,883 - 151,508,013 (+)EnsemblGRCh38hg38GRCh38
GRCh382151,409,902 - 151,534,200 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372152,266,416 - 152,338,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362151,974,674 - 152,040,665 (+)NCBINCBI36hg18NCBI36
Build 342152,091,935 - 152,157,927NCBI
Celera2145,880,663 - 145,948,138 (+)NCBI
Cytogenetic Map2q23.3NCBI
HuRef2144,162,934 - 144,230,323 (+)NCBIHuRef
CHM1_12152,272,265 - 152,339,750 (+)NCBICHM1_1
Rif1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39251,962,725 - 52,016,781 (+)NCBIGRCm39mm39
GRCm39 Ensembl251,962,844 - 52,012,395 (+)Ensembl
GRCm38252,072,815 - 52,126,769 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,072,832 - 52,122,383 (+)EnsemblGRCm38mm10GRCm38
MGSCv37251,928,357 - 51,977,901 (+)NCBIGRCm37mm9NCBIm37
MGSCv36251,894,841 - 51,944,069 (+)NCBImm8
Celera253,801,434 - 53,849,273 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.98NCBI
Rif1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2336,554,689 - 36,607,961 (+)NCBI
Rnor_6.0 Ensembl337,599,728 - 37,647,631 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0337,599,540 - 37,648,818 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0342,697,416 - 42,746,743 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4333,574,934 - 33,624,794 (+)NCBIRGSC3.4rn4RGSC3.4
Celera334,698,698 - 34,747,822 (+)NCBICelera
Cytogenetic Map3q12NCBI
Rif1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544016,979,042 - 17,041,748 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544016,977,710 - 17,047,809 (+)NCBIChiLan1.0ChiLan1.0
RIF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1952,661,155 - 52,709,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11952,661,278 - 52,711,969 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rif1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493646926,045,500 - 26,105,980 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15774,189 - 832,010 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115769,518 - 832,036 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215157,039,785 - 157,101,592 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RIF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11036,845,751 - 36,937,040 (+)NCBI
ChlSab1.1 Ensembl1036,845,777 - 36,907,015 (+)Ensembl
Rif1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248665,619,758 - 5,680,165 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000026208   ⟹   ENSPPAP00000005876
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B155,985,960 - 156,052,926 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000026215   ⟹   ENSPPAP00000005879
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B155,985,960 - 156,052,926 (+)Ensembl
RefSeq Acc Id: XM_003818309   ⟹   XP_003818357
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B155,985,960 - 156,052,926 (+)NCBI
Mhudiblu_PPA_v02B38,721,828 - 38,793,834 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003818311   ⟹   XP_003818359
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B155,985,969 - 156,052,926 (+)NCBI
Mhudiblu_PPA_v02B38,721,837 - 38,793,834 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003818312   ⟹   XP_003818360
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B155,985,960 - 156,052,926 (+)NCBI
Mhudiblu_PPA_v02B38,721,828 - 38,793,834 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014343978   ⟹   XP_014199464
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B155,985,972 - 156,051,493 (+)NCBI
Mhudiblu_PPA_v02B38,721,702 - 38,788,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034954272   ⟹   XP_034810163
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,676 - 38,788,996 (+)NCBI
RefSeq Acc Id: XM_034954274   ⟹   XP_034810165
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,676 - 38,788,996 (+)NCBI
RefSeq Acc Id: XM_034954275   ⟹   XP_034810166
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,658 - 38,788,996 (+)NCBI
RefSeq Acc Id: XM_034954276   ⟹   XP_034810167
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,675 - 38,788,996 (+)NCBI
RefSeq Acc Id: XM_034954277   ⟹   XP_034810168
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,700 - 38,788,996 (+)NCBI
RefSeq Acc Id: XM_034954278   ⟹   XP_034810169
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,849 - 38,788,996 (+)NCBI
RefSeq Acc Id: XM_034954279   ⟹   XP_034810170
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,722,002 - 38,788,996 (+)NCBI
RefSeq Acc Id: XR_004670161
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,676 - 38,818,488 (+)NCBI
RefSeq Acc Id: XR_004670162
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,676 - 38,806,925 (+)NCBI
RefSeq Acc Id: XR_004670163
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B38,721,676 - 38,817,844 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003818357   ⟸   XM_003818309
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_003818360   ⟸   XM_003818312
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_003818359   ⟸   XM_003818311
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_014199464   ⟸   XM_014343978
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034810166   ⟸   XM_034954275
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034810167   ⟸   XM_034954276
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034810163   ⟸   XM_034954272
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034810165   ⟸   XM_034954274
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034810168   ⟸   XM_034954277
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034810169   ⟸   XM_034954278
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034810170   ⟸   XM_034954279
- Peptide Label: isoform X7
RefSeq Acc Id: ENSPPAP00000005879   ⟸   ENSPPAT00000026215
RefSeq Acc Id: ENSPPAP00000005876   ⟸   ENSPPAT00000026208
Protein Domains
Rif1_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000023754 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000005876 UniProtKB/TrEMBL
  ENSPPAP00000005879 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000026208 UniProtKB/TrEMBL
  ENSPPAT00000026215 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Rif1 UniProtKB/TrEMBL
  Rif1_N UniProtKB/TrEMBL
KEGG Report pps:100995759 UniProtKB/TrEMBL
NCBI Gene RIF1 ENTREZGENE
PANTHER PTHR22928 UniProtKB/TrEMBL
Pfam Rif1_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R8ZLP8_PANPA UniProtKB/TrEMBL
  A0A2R8ZPE7_PANPA UniProtKB/TrEMBL