EAF1 (ELL associated factor 1) - Rat Genome Database

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Gene: EAF1 (ELL associated factor 1) Pan paniscus
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Symbol: EAF1
Name: ELL associated factor 1
RGD ID: 11951303
Description: ENCODES a protein that exhibits transcription elongation factor activity (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription elongation by RNA polymerase II (inferred); transcription elongation by RNA polymerase II (inferred); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN intercellular bridge (inferred); intracellular membrane-bounded organelle (inferred); nuclear body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ELL-associated factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,412,666 - 15,427,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,417,430 - 15,432,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,353,459 - 15,368,579 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,689,745 - 15,705,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,689,745 - 15,705,300 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
EAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,412,666 - 15,427,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,417,430 - 15,432,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,353,459 - 15,368,579 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,689,745 - 15,705,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,689,745 - 15,705,300 (+)Ensemblpanpan1.1panPan2
EAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,427,598 - 15,442,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,427,598 - 15,450,635 (+)EnsemblGRCh38hg38GRCh38
GRCh37315,469,105 - 15,484,120 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,444,068 - 15,459,124 (+)NCBINCBI36Build 36hg18NCBI36
Build 34315,443,865 - 15,459,123NCBI
Celera315,407,296 - 15,422,352 (+)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,404,403 - 15,419,455 (+)NCBIHuRef
CHM1_1315,419,949 - 15,434,999 (+)NCBICHM1_1
T2T-CHM13v2.0315,430,010 - 15,445,021 (+)NCBIT2T-CHM13v2.0
Eaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,217,036 - 31,231,815 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,216,356 - 31,231,815 (+)EnsemblGRCm39 Ensembl
GRCm381431,495,079 - 31,509,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,494,399 - 31,509,858 (+)EnsemblGRCm38mm10GRCm38
MGSCv371432,308,265 - 32,323,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,324,152 - 30,338,867 (+)NCBIMGSCv36mm8
Celera1427,754,057 - 27,768,861 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.14NCBI
Eaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,704,727 - 6,719,476 (+)NCBIGRCr8
mRatBN7.2166,698,322 - 6,713,071 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,698,322 - 6,713,071 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,710,831 - 6,725,457 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,855,725 - 7,870,351 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,718,496 - 6,733,172 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,588,217 - 7,602,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,588,217 - 7,602,966 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,523,081 - 7,537,830 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,938,938 - 6,953,687 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,939,794 - 6,950,565 (+)NCBI
Celera168,477,375 - 8,492,124 (-)NCBICelera
Cytogenetic Map16p16NCBI
Eaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,933,290 - 1,947,932 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554301,933,290 - 1,946,900 (+)NCBIChiLan1.0ChiLan1.0
EAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12327,188,983 - 27,203,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2327,159,751 - 27,203,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2327,163,324 - 27,177,930 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02327,701,202 - 27,715,545 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2327,629,445 - 27,715,744 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12327,390,596 - 27,404,986 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02327,452,366 - 27,466,745 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02327,701,137 - 27,715,537 (-)NCBIUU_Cfam_GSD_1.0
Eaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,811,142 - 169,825,002 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364732,949,692 - 2,963,554 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364732,950,321 - 2,963,560 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,654,630 - 2,671,132 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,654,829 - 2,671,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,581,817 - 2,597,145 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,261,013 - 60,277,177 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1560,260,967 - 60,277,626 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604133,293,734 - 33,309,009 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eaf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248225,239,964 - 5,253,810 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248225,240,423 - 5,253,762 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003826211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000055696   ⟹   ENSPPAP00000032826
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,689,745 - 15,705,300 (+)Ensembl
RefSeq Acc Id: XM_003826211   ⟹   XP_003826259
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,412,666 - 15,427,773 (+)NCBI
NHGRI_mPanPan1315,417,430 - 15,432,533 (+)NCBI
Mhudiblu_PPA_v0315,353,459 - 15,368,579 (+)NCBI
PanPan1.1315,689,745 - 15,705,300 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003826259 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000032826.1
RefSeq Acc Id: XP_003826259   ⟸   XM_003826211
- Sequence:
RefSeq Acc Id: ENSPPAP00000032826   ⟸   ENSPPAT00000055696

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039271 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055696.1 UniProtKB/TrEMBL
InterPro EAF_fam UniProtKB/TrEMBL
  Tscrpt_elong_fac_Eaf_N UniProtKB/TrEMBL
NCBI Gene EAF1 ENTREZGENE
PANTHER ELL-ASSOCIATED FACTOR 1 UniProtKB/TrEMBL
  PTHR15970 UniProtKB/TrEMBL
Pfam EAF UniProtKB/TrEMBL
UniProt A0A2R9BTQ2_PANPA UniProtKB/TrEMBL