ACAN (aggrecan) - Rat Genome Database

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Gene: ACAN (aggrecan) Pan paniscus
Analyze
Symbol: ACAN
Name: aggrecan
RGD ID: 11948925
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); INVOLVED IN cartilage condensation (ortholog); cellular response to growth factor stimulus (ortholog); central nervous system development (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Brain Injuries (ortholog); colon cancer (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11586,733,853 - 86,771,420 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1586,733,853 - 86,771,420 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01567,492,494 - 67,563,265 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
ACAN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11586,733,853 - 86,771,420 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1586,733,853 - 86,771,420 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01567,492,494 - 67,563,265 (+)NCBIMhudiblu_PPA_v0panPan3
ACAN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1588,803,436 - 88,875,353 (+)EnsemblGRCh38hg38GRCh38
GRCh381588,803,436 - 88,875,353 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371589,346,667 - 89,418,584 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361587,147,678 - 87,219,589 (+)NCBINCBI36hg18NCBI36
Build 341587,147,993 - 87,218,832NCBI
Celera1565,748,790 - 65,819,902 (+)NCBI
Cytogenetic Map15q26.1NCBI
HuRef1565,458,891 - 65,530,587 (+)NCBIHuRef
CHM1_11589,188,178 - 89,259,230 (+)NCBICHM1_1
Acan
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39778,702,974 - 78,764,847 (+)NCBIGRCm39mm39
GRCm39 Ensembl778,703,231 - 78,764,847 (+)Ensembl
GRCm38779,053,226 - 79,115,099 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,053,483 - 79,115,099 (+)EnsemblGRCm38mm10GRCm38
MGSCv37786,198,369 - 86,259,985 (+)NCBIGRCm37mm9NCBIm37
MGSCv36778,926,996 - 78,988,612 (+)NCBImm8
Celera776,452,812 - 76,514,796 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map744.88NCBI
Acan
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21132,981,034 - 133,044,416 (+)NCBI
Rnor_6.0 Ensembl1140,762,758 - 140,824,441 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01140,762,758 - 140,824,441 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01141,732,130 - 141,793,202 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41134,787,341 - 134,848,992 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11134,865,683 - 134,927,335 (+)NCBI
Celera1125,052,984 - 125,114,449 (+)NCBICelera
Cytogenetic Map1q31NCBI
Acan
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541616,125,536 - 16,186,046 (-)NCBIChiLan1.0ChiLan1.0
ACAN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1351,995,100 - 52,031,812 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl351,969,779 - 52,031,544 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha354,631,503 - 54,667,931 (+)NCBI
ROS_Cfam_1.0352,389,075 - 52,451,203 (+)NCBI
UMICH_Zoey_3.1351,936,640 - 51,973,031 (+)NCBI
UNSW_CanFamBas_1.0352,147,017 - 52,183,413 (+)NCBI
UU_Cfam_GSD_1.0352,485,855 - 52,522,279 (+)NCBI
Acan
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640131,487,810 - 131,554,134 (-)NCBI
SpeTri2.0NW_00493648314,811,152 - 14,846,305 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACAN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl754,449,588 - 54,520,153 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1754,449,830 - 54,520,606 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2759,444,443 - 59,484,493 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACAN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1297,345,350 - 7,416,951 (+)NCBI
Vero_WHO_p1.0NW_02366605939,423,196 - 39,494,914 (-)NCBI
Acan
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476816,093,552 - 16,156,655 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000054935   ⟹   ENSPPAP00000032069
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1586,733,853 - 86,771,420 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054939   ⟹   ENSPPAP00000032073
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1586,733,853 - 86,771,214 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054945   ⟹   ENSPPAP00000032079
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1586,733,853 - 86,771,062 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054953   ⟹   ENSPPAP00000032087
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1586,733,853 - 86,747,562 (+)Ensembl
RefSeq Acc Id: XM_034939375   ⟹   XP_034795266
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01567,492,680 - 67,563,265 (+)NCBI
RefSeq Acc Id: XM_034939376   ⟹   XP_034795267
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01567,492,494 - 67,563,265 (+)NCBI
RefSeq Acc Id: XM_034939377   ⟹   XP_034795268
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01567,500,438 - 67,563,265 (+)NCBI
RefSeq Acc Id: XM_034939378   ⟹   XP_034795269
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01567,492,680 - 67,563,265 (+)NCBI
RefSeq Acc Id: XM_034939379   ⟹   XP_034795270
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01567,492,680 - 67,563,265 (+)NCBI
RefSeq Acc Id: XM_034939380   ⟹   XP_034795271
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01567,492,680 - 67,563,265 (+)NCBI
RefSeq Acc Id: XM_034939381   ⟹   XP_034795272
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01567,492,680 - 67,563,265 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_034795267   ⟸   XM_034939376
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034795266   ⟸   XM_034939375
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034795270   ⟸   XM_034939379
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034795271   ⟸   XM_034939380
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034795272   ⟸   XM_034939381
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034795269   ⟸   XM_034939378
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034795268   ⟸   XM_034939377
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000032069   ⟸   ENSPPAT00000054935
RefSeq Acc Id: ENSPPAP00000032079   ⟸   ENSPPAT00000054945
RefSeq Acc Id: ENSPPAP00000032073   ⟸   ENSPPAT00000054939
RefSeq Acc Id: ENSPPAP00000032087   ⟸   ENSPPAT00000054953


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038878 Ensembl, ENTREZGENE
NCBI Gene ACAN ENTREZGENE