ACTRT2 (actin related protein T2)

Gene: ACTRT2 (actin related protein T2) Pan paniscus

Analyze

Symbol:

ACTRT2

Name:

actin related protein T2

RGD ID:

11948874

Description:

ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); dilated cardiomyopathy 1LL (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

actin-related protein T2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	225,297,615 - 225,299,858 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	223,942,329 - 223,944,572 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	1,680,590 - 1,682,020 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	2,818,691 - 2,820,133 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	2,818,917 - 2,820,050 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

dilated cardiomyopathy 1LL (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

genetic disease (ISO)

Goldberg-Shprintzen syndrome (ISO)

immunodeficiency 16 (ISO)

immunodeficiency 38 (ISO)

Joubert syndrome 25 (ISO)

Keloid (ISO)

Neurodevelopmental Disorders (ISO)

Peroxisome Biogenesis Disorder, Complementation Group 7 (ISO)

Shprintzen-Goldberg Craniosynostosis (ISO)

References

Genomics

Comparative Map Data

ACTRT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	225,297,615 - 225,299,858 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	223,942,329 - 223,944,572 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	1,680,590 - 1,682,020 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	2,818,691 - 2,820,133 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	2,818,917 - 2,820,050 (+)	Ensembl	panpan1.1		panPan2

ACTRT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	3,021,467 - 3,022,903 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	3,021,467 - 3,022,903 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	2,938,031 - 2,939,467 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	2,927,906 - 2,929,327 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	2,136,394 - 2,137,815 (+)	NCBI		Celera
Cytogenetic Map	1	p36.32	NCBI
HuRef	1	2,233,024 - 2,234,445 (+)	NCBI		HuRef
CHM1_1	1	2,925,090 - 2,926,511 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	2,523,087 - 2,524,523 (+)	NCBI		T2T-CHM13v2.0

Actrt2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	154,750,885 - 154,752,324 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	154,750,890 - 154,752,324 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	154,666,428 - 154,667,867 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	154,666,433 - 154,667,867 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	154,040,537 - 154,041,976 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	153,510,234 - 153,511,533 (-)	NCBI		MGSCv36	mm8
Celera	4	156,945,512 - 156,946,951 (-)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	84.69	NCBI

Actrt2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	170,518,470 - 170,519,870 (-)	NCBI		GRCr8
mRatBN7.2	5	165,236,092 - 165,237,492 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	165,236,086 - 165,237,629 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	167,940,981 - 167,942,381 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	169,762,387 - 169,763,787 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	169,724,919 - 169,726,319 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	172,077,290 - 172,078,690 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	172,077,282 - 172,078,760 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	175,534,186 - 175,535,586 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	171,473,765 - 171,475,165 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	171,484,260 - 171,485,660 (-)	NCBI
Celera	5	163,443,936 - 163,445,336 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Actrt2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	8,465,620 - 8,466,744 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	8,465,523 - 8,466,841 (-)	NCBI	ChiLan1.0	ChiLan1.0

ACTRT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	57,659,055 - 57,660,479 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	57,659,262 - 57,660,395 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	57,671,258 - 57,672,681 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	57,861,591 - 57,863,014 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	57,861,794 - 57,862,927 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	57,852,649 - 57,854,072 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	57,745,180 - 57,746,603 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	58,135,055 - 58,136,480 (+)	NCBI		UU_Cfam_GSD_1.0

Actrt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	28,699,309 - 28,700,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	765,125 - 766,432 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	765,125 - 766,432 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACTRT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	64,664,641 - 64,665,774 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	64,664,484 - 64,665,774 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	59,253,686 - 59,255,135 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACTRT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	128,660,029 - 128,665,485 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	128,660,121 - 128,661,254 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	32,946,475 - 32,947,937 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Actrt2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	7,288,304 - 7,289,434 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	7,288,206 - 7,289,499 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003805377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000007399 ⟹ ENSPPAP00000001515

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	2,818,917 - 2,820,050 (+)	Ensembl

RefSeq Acc Id:

XM_003805377 ⟹ XP_003805425

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	225,297,615 - 225,299,858 (-)	NCBI
NHGRI_mPanPan1	1	223,942,329 - 223,944,572 (-)	NCBI
Mhudiblu_PPA_v0	1	1,680,590 - 1,682,020 (+)	NCBI
PanPan1.1	1	2,818,691 - 2,820,133 (+)	NCBI

Sequence:

show sequence

GGAGACAACCCCCTGGCCCCCTGGAAGAGGCCTCAGCAGGCCCAGGCCACCTGGAGGGAGAGCA
GACCTGCGGCTGAGGATGCAGGGCTCCCGGGCACGGTGCTAGCCCTGCCTTGAGACACCCCGAG
AGCTGTGGGAAGAGCTGTGGGATCCCCTATTGCATCACAAAGCGGCCCTGGAGGGCTGGTCTTT
ATTTTGATGAGGCTGAGAAGGGAAGGCTGCGGGCATGTTTAATCCACACGCTTTAGACTCCCCG
GCTGTGATTTTTGACAATGGCTCGGGGTTCTGCAAAGCGGGCCTGTCTGGGGAGTTTGGACCCC
GGCACATGGTCAGCTCCATCGTGGGGCACCTGAAATTCCAGGCTCCCTCAGCAGGGGCCAACCA
GAAGAAGTACTTTGTGGGGGAGGAGGCCCTGTACCAGCAGGAGGCCCTGCAGCTGCACTCCCCT
TTCGAGCGTGGCCTGATCACAGGGTGGGATGACGTGGAGAGACTCTGGAAGCACCTCTTTGAGT
GGGAGCTGGGCGTGAAACCCAGCGACCAGCCCCTGCTTGCAACGGAGCCCTCCCTGAACCCCAG
GGAGAACCGTGAGAAGATGGCAGAAATCATGTTCGAGAACTTCGGCGTGCCCGCTTTCTACCTG
TCGGACCAGGCGGTGCTGGCTCTCTACGCCTCGGCCTGTGTCACGGGCCTGGTGGTGGACAGCG
GGGATGGGGTCACCTGCACTGTCCCCATCTTTGAGGGTTACTGCCTGCCCCACGCAGTCACCAA
GCTCCACGTGGCGGGCAGGGACATCACGGAGCTCCTCATGCAGCTGCTCCTGGCCAGCGGCCAC
ACCTTCCCCTGCCAGCTGGACAAGGGTCTCGTGGACGACATCAAAAAGAAGCTGTGCTACGTGG
CCTTGGAGCCCGAGAAGGAGCTTTCCCGGAGGCCGGAGGAGGTCCTGAGGGAGTACAAGCTGCC
CGACGGGAACATCATCAGCCTCGGGGACCCGCTGCACCAGGCGCCCGAGGCCCTGTTCGTGCCC
CAGCAGCTGGGCAGCCAGAGCCCCGGGCTCTCGAATATGGTCTCCAGCAGCATCACCAAGTGTG
ATACCGACATCCAGAAGATCCTCTTTGGGGAGATCGTGCTGTCGGGGGGCACTACCCTGTTCCA
CGGGCTGGATGACCGGCTTCTCAAGGAGCTGGAGCAGCTGGCCTCCAAGGACACCCCCATCAAG
ATCACGGCTCCCCCCGACCGGTGGTTCTCCACCTGGATTGGAGCCTCCATCGTCACCTCTCTGA
GTAGCTTCAAGCAGATGTGGGTCACCGCCGCAGACTTCAAGGAGTTTGGGACCTCCGTGGTGCA
GAGAAGATGCTTCTGAAGGCCGCTTCTCGTTGGGTACGGTGGGGGGTGAACCGTAGCCCCAGCT
TTGGGGGGATGTTCAATAAATGACCAATGCTGGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003805425	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000001515
	ENSPPAP00000001515.1

RefSeq Acc Id:

XP_003805425 ⟸ XM_003805377

- UniProtKB:

A0A2R8Z9G4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFNPHALDSPAVIFDNGSGFCKAGLSGEFGPRHMVSSIVGHLKFQAPSAGANQKKYFVGEEALY
QQEALQLHSPFERGLITGWDDVERLWKHLFEWELGVKPSDQPLLATEPSLNPRENREKMAEIMF
ENFGVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYCLPHAVTKLHVAGRDITEL
LMQLLLASGHTFPCQLDKGLVDDIKKKLCYVALEPEKELSRRPEEVLREYKLPDGNIISLGDPL
HQAPEALFVPQQLGSQSPGLSNMVSSSITKCDTDIQKILFGEIVLSGGTTLFHGLDDRLLKELE
QLASKDTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGTSVVQRRCF

hide sequence

RefSeq Acc Id:

ENSPPAP00000001515 ⟸ ENSPPAT00000007399

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000006845	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000007399.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.40	UniProtKB/TrEMBL
InterPro	Actin	UniProtKB/TrEMBL
	Actin/actin-like_CS	UniProtKB/TrEMBL
	ATPase_NBD	UniProtKB/TrEMBL
KEGG Report	pps:100995320	UniProtKB/TrEMBL
NCBI Gene	ACTRT2	ENTREZGENE
PANTHER	PTHR11937	UniProtKB/TrEMBL
	PTHR11937:SF38	UniProtKB/TrEMBL
Pfam	Actin	UniProtKB/TrEMBL
PRINTS	ACTIN	UniProtKB/TrEMBL
PROSITE	ACTINS_ACT_LIKE	UniProtKB/TrEMBL
SMART	ACTIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53067	UniProtKB/TrEMBL
UniProt	A0A2R8Z9G4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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