CXXC1 (CXXC finger protein 1) - Rat Genome Database

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Gene: CXXC1 (CXXC finger protein 1) Pan paniscus
Analyze
Symbol: CXXC1
Name: CXXC finger protein 1
RGD ID: 11947243
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (inferred); regulation of DNA-templated transcription (inferred); PARTICIPATES IN DNA modification pathway; histone modification pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN Set1C/COMPASS complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CXXC-type zinc finger protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21767,810,240 - 67,816,170 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11853,502,843 - 53,508,773 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01843,662,843 - 43,668,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11847,010,403 - 47,016,383 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1847,010,650 - 47,014,937 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CXXC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21767,810,240 - 67,816,170 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11853,502,843 - 53,508,773 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01843,662,843 - 43,668,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11847,010,403 - 47,016,383 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1847,010,650 - 47,014,937 (-)Ensemblpanpan1.1panPan2
CXXC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381850,282,347 - 50,287,692 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1850,282,343 - 50,287,839 (-)EnsemblGRCh38hg38GRCh38
GRCh371847,808,717 - 47,814,062 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361846,062,711 - 46,068,690 (-)NCBINCBI36Build 36hg18NCBI36
Build 341846,062,716 - 46,068,186NCBI
Celera1844,665,266 - 44,671,245 (-)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1844,663,153 - 44,669,132 (-)NCBIHuRef
CHM1_11847,804,301 - 47,810,280 (-)NCBICHM1_1
T2T-CHM13v2.01850,484,088 - 50,489,433 (-)NCBIT2T-CHM13v2.0
Cxxc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391874,349,283 - 74,354,564 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1874,349,195 - 74,354,567 (+)EnsemblGRCm39 Ensembl
GRCm381874,216,212 - 74,221,493 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1874,216,124 - 74,221,496 (+)EnsemblGRCm38mm10GRCm38
MGSCv371874,375,866 - 74,381,145 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361874,341,581 - 74,346,860 (+)NCBIMGSCv36mm8
Celera1875,446,207 - 75,451,474 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1850.7NCBI
Cxxc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81870,088,407 - 70,093,786 (+)NCBIGRCr8
mRatBN7.21867,813,185 - 67,818,556 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1867,813,206 - 67,818,551 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1869,921,674 - 69,926,734 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01870,596,065 - 70,601,124 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01868,462,076 - 68,467,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01870,192,520 - 70,197,871 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1870,192,493 - 70,197,867 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01869,335,221 - 69,340,567 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41871,006,887 - 71,011,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11871,079,896 - 71,085,145 (+)NCBI
Celera1865,994,792 - 65,999,852 (+)NCBICelera
Cytogenetic Map18q12.2NCBI
Cxxc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540235,335,520 - 35,340,890 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540235,335,520 - 35,340,891 (-)NCBIChiLan1.0ChiLan1.0
CXXC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1778,591,288 - 78,596,642 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl778,591,434 - 78,596,643 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha777,995,065 - 78,001,014 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0778,654,481 - 78,660,428 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1778,367,136 - 78,373,085 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0778,399,571 - 78,405,512 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0778,684,270 - 78,690,224 (+)NCBIUU_Cfam_GSD_1.0
Cxxc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494437,603,534 - 37,608,917 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649712,842,564 - 12,847,997 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649712,842,569 - 12,847,952 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXXC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl199,934,497 - 99,940,130 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1199,934,493 - 99,940,125 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21109,623,496 - 109,629,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CXXC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11830,668,879 - 30,674,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1830,668,821 - 30,675,301 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660504,815,732 - 4,821,664 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxxc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477813,908,221 - 13,914,359 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477813,908,430 - 13,915,273 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000034014   ⟹   ENSPPAP00000011359
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1847,010,650 - 47,014,937 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000034015   ⟹   ENSPPAP00000011360
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1847,010,650 - 47,014,937 (-)Ensembl
RefSeq Acc Id: XM_003827216   ⟹   XP_003827264
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21767,810,240 - 67,815,912 (-)NCBI
NHGRI_mPanPan11853,502,843 - 53,508,470 (-)NCBI
Mhudiblu_PPA_v01843,662,843 - 43,668,825 (-)NCBI
PanPan1.11847,010,403 - 47,016,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008952585   ⟹   XP_008950833
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21767,810,240 - 67,816,170 (-)NCBI
NHGRI_mPanPan11853,502,843 - 53,508,773 (-)NCBI
Mhudiblu_PPA_v01843,662,844 - 43,668,825 (-)NCBI
PanPan1.11847,010,403 - 47,016,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034943715   ⟹   XP_034799606
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21767,810,240 - 67,815,735 (-)NCBI
NHGRI_mPanPan11853,502,843 - 53,508,347 (-)NCBI
Mhudiblu_PPA_v01843,662,844 - 43,668,254 (-)NCBI
RefSeq Acc Id: XM_034943716   ⟹   XP_034799607
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21767,810,240 - 67,815,734 (-)NCBI
NHGRI_mPanPan11853,502,843 - 53,508,345 (-)NCBI
Mhudiblu_PPA_v01843,662,844 - 43,668,286 (-)NCBI
RefSeq Acc Id: XM_055102425   ⟹   XP_054958400
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21767,810,240 - 67,815,733 (-)NCBI
NHGRI_mPanPan11853,502,843 - 53,508,343 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008950833   ⟸   XM_008952585
- Peptide Label: isoform X3
- UniProtKB: A0A2R9A6Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003827264   ⟸   XM_003827216
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A3A8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034799607   ⟸   XM_034943716
- Peptide Label: isoform X5
- UniProtKB: A0A2R9A3A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034799606   ⟸   XM_034943715
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A3A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000011359   ⟸   ENSPPAT00000034014
RefSeq Acc Id: ENSPPAP00000011360   ⟸   ENSPPAT00000034015
RefSeq Acc Id: XP_054958400   ⟸   XM_055102425
- Peptide Label: isoform X4
Protein Domains
CXXC-type   PHD-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028863 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034014.1 UniProtKB/TrEMBL
  ENSPPAT00000034015.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro CpG-bd_C UniProtKB/TrEMBL
  Spp1/CFP1 UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_CXXC UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene CXXC1 ENTREZGENE
PANTHER CXXC-TYPE ZINC FINGER PROTEIN 1 UniProtKB/TrEMBL
  PTHR46174 UniProtKB/TrEMBL
Pfam PHD UniProtKB/TrEMBL
  zf-CpG_bind_C UniProtKB/TrEMBL
  zf-CXXC UniProtKB/TrEMBL
PROSITE ZF_CXXC UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
UniProt A0A2R9A3A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A6Q6 ENTREZGENE, UniProtKB/TrEMBL