C6H7orf57 (chromosome 6 C7orf57 homolog) - Rat Genome Database

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Gene: C6H7orf57 (chromosome 6 C7orf57 homolog) Pan paniscus
Analyze
Symbol: C6H7orf57 (Ensembl: C7orf57)
Name: chromosome 6 C7orf57 homolog (Ensembl:chromosome 7 open reading frame 57)
RGD ID: 11946798
Description: ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C7H7orf57; chromosome 7 C7orf57 homolog; chromosome 7 open reading frame, human C7orf57; uncharacterized protein C7orf57 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2652,911,536 - 52,942,617 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17101,236,269 - 101,266,510 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0748,677,343 - 48,702,592 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1748,786,936 - 48,810,784 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl748,791,961 - 48,810,744 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
C6H7orf57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2652,911,536 - 52,942,617 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17101,236,269 - 101,266,510 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0748,677,343 - 48,702,592 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1748,786,936 - 48,810,784 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl748,791,961 - 48,810,744 (+)Ensemblpanpan1.1panPan2
C7orf57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38748,035,543 - 48,061,297 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl748,035,511 - 48,061,304 (+)EnsemblGRCh38hg38GRCh38
GRCh37748,075,140 - 48,100,894 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36748,041,642 - 48,067,418 (+)NCBINCBI36Build 36hg18NCBI36
Celera748,174,395 - 48,200,108 (+)NCBICelera
Cytogenetic Map7p12.3NCBI
HuRef747,960,597 - 47,986,529 (+)NCBIHuRef
CHM1_1748,078,810 - 48,104,594 (+)NCBICHM1_1
T2T-CHM13v2.0748,197,785 - 48,223,552 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2748,115,064 - 48,140,794 (+)NCBI
Gm11992
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39118,998,592 - 9,019,354 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl118,998,594 - 9,019,356 (+)EnsemblGRCm39 Ensembl
GRCm38119,048,592 - 9,069,354 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl119,048,594 - 9,069,356 (+)EnsemblGRCm38mm10GRCm38
MGSCv37118,948,595 - 8,969,357 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36118,948,595 - 8,969,357 (+)NCBIMGSCv36mm8
Celera119,485,933 - 9,506,745 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map115.79NCBI
C14h7orf57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81487,962,231 - 87,982,043 (+)NCBIGRCr8
mRatBN7.21483,748,478 - 83,768,293 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1483,748,478 - 83,767,435 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1488,138,749 - 88,157,580 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01489,378,653 - 89,397,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01485,845,808 - 85,864,639 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01489,253,102 - 89,272,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1489,253,373 - 89,273,137 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01489,050,478 - 89,069,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41489,587,764 - 89,606,874 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1482,784,769 - 82,803,577 (+)NCBICelera
Cytogenetic Map14q21NCBI
LOC102007302
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554565,400,302 - 5,414,448 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554565,399,326 - 5,414,002 (-)NCBIChiLan1.0ChiLan1.0
C18H7orf57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11882,168 - 95,529 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1881,796 - 94,950 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,029 - 62,402 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.018114,852 - 128,098 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl18114,870 - 128,075 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11889,682 - 103,046 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01892,633 - 105,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.018227,665 - 240,998 (+)NCBIUU_Cfam_GSD_1.0
CUNH7orf57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118103,247,974 - 103,268,863 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647822,460,492 - 22,473,310 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647822,460,480 - 22,480,080 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C18H7orf57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,451,103 - 48,473,226 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,451,099 - 48,473,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH7orf57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12110,735,574 - 10,762,513 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606211,469,525 - 11,496,228 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH7orf57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247405,536,589 - 5,555,067 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247405,538,102 - 5,555,257 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000049369   ⟹   ENSPPAP00000026535
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl748,791,961 - 48,810,744 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000049374   ⟹   ENSPPAP00000026540
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl748,797,113 - 48,810,744 (+)Ensembl
RefSeq Acc Id: XM_034964076   ⟹   XP_034819967
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2652,911,536 - 52,942,615 (+)NCBI
NHGRI_mPanPan17101,236,269 - 101,266,510 (+)NCBI
Mhudiblu_PPA_v0748,677,343 - 48,702,592 (+)NCBI
RefSeq Acc Id: XM_034964077   ⟹   XP_034819968
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2652,911,536 - 52,942,615 (+)NCBI
NHGRI_mPanPan17101,236,269 - 101,266,510 (+)NCBI
Mhudiblu_PPA_v0748,677,343 - 48,702,592 (+)NCBI
RefSeq Acc Id: XM_055115932   ⟹   XP_054971907
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2652,911,536 - 52,942,616 (+)NCBI
NHGRI_mPanPan17101,236,269 - 101,266,510 (+)NCBI
RefSeq Acc Id: XM_057302869   ⟹   XP_057158852
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2652,911,536 - 52,942,617 (+)NCBI
NHGRI_mPanPan17101,236,269 - 101,266,510 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034819967 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819968 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971907 (Get FASTA)   NCBI Sequence Viewer  
  XP_057158852 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000026535.1
  ENSPPAP00000026540.1
Reference Protein Sequences
RefSeq Acc Id: XP_034819967   ⟸   XM_034964076
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BI16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819968   ⟸   XM_034964077
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BI16 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000026540   ⟸   ENSPPAT00000049374
RefSeq Acc Id: ENSPPAP00000026535   ⟸   ENSPPAT00000049369
RefSeq Acc Id: XP_054971907   ⟸   XM_055115932
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BI16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057158852   ⟸   XM_057302869
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BI16 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036356 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000049369.1 UniProtKB/TrEMBL
  ENSPPAT00000049374.1 UniProtKB/TrEMBL
InterPro DUF5524 UniProtKB/TrEMBL
NCBI Gene C7H7orf57 ENTREZGENE
PANTHER CHROMOSOME 7 OPEN READING FRAME 57 UniProtKB/TrEMBL
  PTHR31097 UniProtKB/TrEMBL
Pfam DUF5524 UniProtKB/TrEMBL
UniProt A0A2R9BI16 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BI20_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 C6H7orf57  chromosome 6 C7orf57 homolog  C7H7orf57  chromosome 7 C7orf57 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C7H7orf57  chromosome 7 C7orf57 homolog    chromosome 7 open reading frame, human C7orf57  Symbol and/or name change 5135510 APPROVED