DNAJC3 (DnaJ heat shock protein family (Hsp40) member C3) - Rat Genome Database

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Gene: DNAJC3 (DnaJ heat shock protein family (Hsp40) member C3) Pan paniscus
Analyze
Symbol: DNAJC3
Name: DnaJ heat shock protein family (Hsp40) member C3
RGD ID: 11945738
Description: ENCODES a protein that exhibits misfolded protein binding (inferred); protein kinase binding (inferred); protein kinase inhibitor activity (inferred); INVOLVED IN cellular response to cold (inferred); negative regulation of apoptotic process (inferred); negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation (inferred); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Combined Cerebellar and Peripheral Ataxia with Hearing Loss and Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN smooth endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dnaJ homolog subfamily C member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21497,199,547 - 97,319,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11395,877,932 - 95,988,726 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01376,853,053 - 76,963,530 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11395,975,607 - 96,114,256 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1396,033,605 - 96,114,165 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DNAJC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21497,199,547 - 97,319,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11395,877,932 - 95,988,726 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01376,853,053 - 76,963,530 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11395,975,607 - 96,114,256 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1396,033,605 - 96,114,165 (+)Ensemblpanpan1.1panPan2
DNAJC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,677,139 - 95,794,988 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1395,677,139 - 95,794,988 (+)EnsemblGRCh38hg38GRCh38
GRCh371396,329,393 - 96,447,242 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361395,127,484 - 95,241,285 (+)NCBINCBI36Build 36hg18NCBI36
Build 341395,127,483 - 95,241,285NCBI
Celera1377,177,188 - 77,295,039 (+)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1376,927,193 - 77,044,763 (+)NCBIHuRef
CHM1_11396,299,542 - 96,417,377 (+)NCBICHM1_1
T2T-CHM13v2.01394,881,700 - 94,999,557 (+)NCBIT2T-CHM13v2.0
Dnajc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,175,371 - 119,219,114 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,175,388 - 119,219,109 (+)EnsemblGRCm39 Ensembl
GRCm3814118,937,932 - 118,981,702 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,937,976 - 118,981,697 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,337,154 - 119,380,924 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614119,337,209 - 119,379,121 (+)NCBIMGSCv36mm8
Celera14117,490,628 - 117,537,345 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.6NCBI
Dnajc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,432,667 - 102,475,643 (+)NCBIGRCr8
mRatBN7.21596,025,605 - 96,068,585 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1596,025,624 - 96,065,181 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1599,935,638 - 99,977,285 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015101,066,102 - 101,108,631 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01597,995,046 - 98,037,458 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015104,186,918 - 104,226,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,186,792 - 104,226,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,610,329 - 107,649,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,881,634 - 103,921,295 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115103,897,413 - 103,937,075 (+)NCBI
Celera1594,875,150 - 94,914,827 (+)NCBICelera
Cytogenetic Map15q24NCBI
Dnajc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,360,832 - 14,412,533 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,361,540 - 14,412,533 (-)NCBIChiLan1.0ChiLan1.0
DNAJC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,323,263 - 46,402,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,307,905 - 46,398,625 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2246,093,175 - 46,185,499 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02246,737,351 - 46,829,808 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2246,736,369 - 46,844,494 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12246,400,716 - 46,493,029 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,433,934 - 46,526,175 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,439,531 - 46,531,587 (+)NCBIUU_Cfam_GSD_1.0
Dnajc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,825,991 - 181,896,607 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647214,055,532 - 14,126,211 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647214,055,548 - 14,126,173 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,230,162 - 65,303,834 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,230,145 - 65,299,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21172,092,332 - 72,161,773 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,474,643 - 74,582,942 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl374,474,548 - 74,579,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604630,900,130 - 31,009,831 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,369,237 - 2,434,433 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248792,369,332 - 2,434,433 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034936863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000013208   ⟹   ENSPPAP00000002800
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1396,033,605 - 96,114,165 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013216   ⟹   ENSPPAP00000002805
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1396,034,928 - 96,114,165 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013217   ⟹   ENSPPAP00000002806
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1396,034,928 - 96,114,165 (+)Ensembl
RefSeq Acc Id: XM_034936863   ⟹   XP_034792754
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21497,199,547 - 97,319,864 (+)NCBI
NHGRI_mPanPan11395,877,932 - 95,988,726 (+)NCBI
Mhudiblu_PPA_v01376,853,053 - 76,963,530 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034792754 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002800.1
  ENSPPAP00000002805.1
  ENSPPAP00000002806.1
Reference Protein Sequences
RefSeq Acc Id: XP_034792754   ⟸   XM_034936863
- UniProtKB: A0A2R8ZCM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000002806   ⟸   ENSPPAT00000013217
RefSeq Acc Id: ENSPPAP00000002805   ⟸   ENSPPAT00000013216
RefSeq Acc Id: ENSPPAP00000002800   ⟸   ENSPPAT00000013208
Protein Domains
J


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000011994 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000013208.1 UniProtKB/TrEMBL
  ENSPPAT00000013216.1 UniProtKB/TrEMBL
  ENSPPAT00000013217.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  1.25.40.10 UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene DNAJC3 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 UniProtKB/TrEMBL
  LD25575P UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_16 UniProtKB/TrEMBL
  TPR_19 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A2R8ZCL6_PANPA UniProtKB/TrEMBL
  A0A2R8ZCM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZCM5_PANPA UniProtKB/TrEMBL