CLDN15 (claudin 15) - Rat Genome Database
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Gene: CLDN15 (claudin 15) Pan paniscus
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Symbol: CLDN15
Name: claudin 15
RGD ID: 11944413
Description: ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: claudin-15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17106,613,604 - 106,620,479 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,613,604 - 106,620,479 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0793,373,450 - 93,380,912 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CLDN15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17106,613,604 - 106,620,479 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,613,604 - 106,620,479 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0793,373,450 - 93,380,912 (-)NCBIMhudiblu_PPA_v0panPan3
CLDN15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7101,232,092 - 101,238,820 (-)EnsemblGRCh38hg38GRCh38
GRCh387101,232,094 - 101,238,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh377100,875,375 - 100,882,101 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,662,094 - 100,667,836 (-)NCBINCBI36hg18NCBI36
Build 347100,470,513 - 100,474,466NCBI
Celera795,884,531 - 95,891,259 (-)NCBI
Cytogenetic Map7q22.1NCBI
HuRef795,468,416 - 95,475,144 (-)NCBIHuRef
CHM1_17100,805,777 - 100,812,511 (-)NCBICHM1_1
CRA_TCAGchr7v27100,233,760 - 100,240,488 (-)NCBI
Cldn15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,996,723 - 137,004,699 (+)NCBIGRCm39mm39
GRCm39 Ensembl5136,995,470 - 137,004,712 (+)Ensembl
GRCm385136,967,869 - 136,975,845 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,966,616 - 136,975,858 (+)EnsemblGRCm38mm10GRCm38
MGSCv375137,443,739 - 137,451,710 (+)NCBIGRCm37mm9NCBIm37
MGSCv365137,252,496 - 137,260,467 (+)NCBImm8
Celera5133,983,919 - 133,991,861 (+)NCBICelera
Cytogenetic Map5G2NCBI
Cldn15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21219,698,169 - 19,708,419 (-)NCBI
Rnor_6.0 Ensembl1222,738,195 - 22,748,860 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01222,738,198 - 22,750,392 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01224,749,982 - 24,759,973 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41220,823,334 - 20,845,306 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11220,813,183 - 20,833,795 (+)NCBI
Celera1221,475,263 - 21,482,160 (-)NCBICelera
Cytogenetic Map12q12NCBI
Cldn15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545616,062,046 - 16,069,540 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545616,062,044 - 16,067,612 (+)NCBIChiLan1.0ChiLan1.0
CLDN15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl68,647,712 - 8,652,650 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.168,647,372 - 8,651,869 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cldn15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365431,106,846 - 1,112,669 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,931,095 - 8,946,955 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,931,099 - 8,937,189 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CLDN15
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12811,940,318 - 11,947,811 (+)NCBI
ChlSab1.1 Ensembl2811,942,271 - 11,947,627 (+)Ensembl
Cldn15
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474016,056,823 - 16,063,250 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048664   ⟹   ENSPPAP00000025834
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7106,613,604 - 106,620,479 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000048669   ⟹   ENSPPAP00000025839
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7106,615,995 - 106,619,169 (-)Ensembl
RefSeq Acc Id: XM_003807194   ⟹   XP_003807242
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.17106,613,604 - 106,620,479 (-)NCBI
Mhudiblu_PPA_v0793,373,450 - 93,380,912 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034964644   ⟹   XP_034820535
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0793,373,452 - 93,380,912 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003807242 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820535 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003807242   ⟸   XM_003807194
- Sequence:
RefSeq Acc Id: XP_034820535   ⟸   XM_034964644
RefSeq Acc Id: ENSPPAP00000025839   ⟸   ENSPPAT00000048669
RefSeq Acc Id: ENSPPAP00000025834   ⟸   ENSPPAT00000048664


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000025834 UniProtKB/TrEMBL
  ENSPPAP00000025839 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048664 UniProtKB/TrEMBL
  ENSPPAT00000048669 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin15 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report pps:100968048 UniProtKB/TrEMBL
NCBI Gene CLDN15 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN15 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A2R9B8A6_PANPA UniProtKB/TrEMBL
  A0A2R9B8B0_PANPA UniProtKB/TrEMBL