CLDN15 (claudin 15) - Rat Genome Database

Name: CLDN15
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: CLDN15 (claudin 15) Pan paniscus

Analyze

Symbol:

CLDN15

Name:

claudin 15

RGD ID:

11944413

Description:

ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN lateral plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

claudin-15

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLDN15 (claudin 15)	NCBI	Ortholog
Mus musculus (house mouse):	Cldn15 (claudin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cldn15 (claudin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cldn15 (claudin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CLDN15 (claudin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cldn15 (claudin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLDN15 (claudin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CLDN15 (claudin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cldn15 (claudin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	106,613,604 - 106,620,479 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	106,613,604 - 106,620,479 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	93,373,450 - 93,380,912 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

lateral plasma membrane (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

CLDN15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	106,613,604 - 106,620,479 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	106,613,604 - 106,620,479 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	93,373,450 - 93,380,912 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

CLDN15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	101,232,092 - 101,238,820 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	101,232,094 - 101,238,820 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	100,875,375 - 100,882,101 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	100,662,094 - 100,667,836 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	100,470,513 - 100,474,466	NCBI
Celera	7	95,884,531 - 95,891,259 (-)	NCBI
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	95,468,416 - 95,475,144 (-)	NCBI		HuRef
CHM1_1	7	100,805,777 - 100,812,511 (-)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	100,233,760 - 100,240,488 (-)	NCBI

Cldn15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	136,996,723 - 137,004,699 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	5	136,995,470 - 137,004,712 (+)	Ensembl
GRCm38	5	136,967,869 - 136,975,845 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	136,966,616 - 136,975,858 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	137,443,739 - 137,451,710 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	137,252,496 - 137,260,467 (+)	NCBI			mm8
Celera	5	133,983,919 - 133,991,861 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI

Cldn15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	19,698,169 - 19,708,419 (-)	NCBI
Rnor_6.0 Ensembl	12	22,738,195 - 22,748,860 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	12	22,738,198 - 22,750,392 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	12	24,749,982 - 24,759,973 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	20,823,334 - 20,845,306 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	12	20,813,183 - 20,833,795 (+)	NCBI
Celera	12	21,475,263 - 21,482,160 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

Cldn15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	16,062,046 - 16,069,540 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	16,062,044 - 16,067,612 (+)	NCBI	ChiLan1.0	ChiLan1.0

CLDN15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	6	8,647,712 - 8,652,650 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	6	8,647,372 - 8,651,869 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cldn15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936543	1,106,846 - 1,112,669 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLDN15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	8,931,095 - 8,946,955 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	8,931,099 - 8,937,189 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CLDN15
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	11,940,318 - 11,947,811 (+)	NCBI
ChlSab1.1 Ensembl	28	11,942,271 - 11,947,627 (+)	Ensembl

Cldn15
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624740	16,056,823 - 16,063,250 (+)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003807194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034964644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000048664 ⟹ ENSPPAP00000025834

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	106,613,604 - 106,620,479 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000048669 ⟹ ENSPPAP00000025839

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	106,615,995 - 106,619,169 (-)	Ensembl

RefSeq Acc Id:

XM_003807194 ⟹ XP_003807242

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	7	106,613,604 - 106,620,479 (-)	NCBI
Mhudiblu_PPA_v0	7	93,373,450 - 93,380,912 (-)	NCBI

Sequence:

show sequence

GGACAGAGCCCTAGGGAACCGGAGCAGGAGATGAGAGTGTCCGCCCTGGGACAGGTGCTCTGCA
CTGGCTCGGGATGGGGACCAGAGGCTGCTAATCCATCATCATTAACGAATAGAGTGGGTGACAG
TCCCTGATAACTGGGAACAGGTTGCAGAGCTTAGCCACAGGATCACGCTCCAGGCTGTTGGCAG
CAGGACCAGGCTCGATGCTGAGTCAAAGATCAACTTAGGAGGAAATTTGAGTTTTGGATGAGAG
CGACTCCCTGGTGGCCTCAGCCCTGTGACACTCACATCCAGGACAGTTCCCGGTGCCAAGCGCT
GGTTATGTGCGGGGGGCTTGACTCCCTGGTCCCAACGAGGTCTCAGTGTGTTGCCCAGGCTGGT
CTTGAACTCCTGAGTTCAAGCAATCGTCTCAGCCCAGCCTCCCAAAGTGCTAGGATTACAGGCG
AGAGCCACTGCGCCCGGCCCCTGGTCCCAGTTCTCACCACAGCCCCTGCAGTAAGCAGTCGGGT
GTGTCACCGACAGAGCAGAAGCTCAGGGGACTAAAACTCCCCGCCTGAGTTCCCTGGTGAATGG
ATGGTGGGGCCGAGTTCCATTCCAGGCTGGATGGAGCCCAGAGCTGTGGGTCTCCTACCCTCCC
ATCCCCTCATTCCAGCTTGATCTTCCTTAAGAGACTCATATGCCCCAACCCCTCGGTCTGAGTA
TCTTAGATTGTTCTCATGGTTCCTCCATCCTTCACCACTGAAGGCTGCTGTTCATTCTCTCTCC
GTCTCTGTCCCTTATTGCTCTCACGTCTGTCTCTGTCATCTTTTCACTCCTTGTCCCTCTTACT
CCGTTCTTTGGCCCCCAATGAAAGCTGAGTCAGAGACAGACGCTTCCCCTCAGTTCCCAGTGCC
TCCCTTGGGGGCCCCTCCTTGGCTGTATCCGTCAGTGGCTCCAGGCTGCCGCGCGCAGGCTTAG
CTCATTCCTCTGACCTGCCAGGAAGCAGAGAGACCCACAGAGCAGGAGGGAGGCAGAAACCTGG
AGGCAGAAAGTGGAGACAGACCTGAGCCCGAGGAAGAGGCAGGCAGAGGCTGAGGCTGATTCCA
CCCCAGCCTGCCCGGACAACCCTCCTTAGCCGCAGCCCCTTCCAGTTCCCTAGGGGTTCTGCCC
CTCCCCCTCTCTGGGGCACCAGCCCCCCAGGGTCCTGCATCCCACCATGTCGATGGCTGTGGAA
ACCTTTGGCTTCTTCATGGCAGCTGTGGGGCTGCTGATGCTGGGGGTGACTCTGCCAAACAGCT
ACTGGCGAGTGTCCACCGTGCATGGGAACGTCATCACCACCAACACCATCTTCGAGAACCTCTG
GTTTAGCTGTGCCACCGACTCCCTGGGCGTCTACAACTGCTGGGAGTTCCCGTCCATGCTGGCC
CTCTCTGGATATATTCAGGCCTGCCGGGCACTCATGATCACCGCCATCCTCCTGGGCTTCCTCG
GCCTCTTGCTAGGCATAGCGGGCCTGCGCTGCACCAACATTGGGGGCCTGGAGCTCTCCAGGAA
AGCCAAGCTGGCGGCCACCGCAGGGGCCCTCCATATTCTGGCCGGTATCTGCGGGATGGTGGCC
ATCTCCTGGTACGCCTTCAACATCACCCGGGACTTCTTCGACCCCTTGTACCCCGGAACCAAGT
ACGAGCTGGGCCCCGCCCTATACCTGGGCTGGAGCGCCTCACTGATCTCCATCCTGGGTGGCCT
CTGCCTCTGCTCCGCCTGCTGCTGCGGCTCTGACGAGGACCCAGCCGCCAGCGCCCGGCGGTCC
TACCAGGCTCCAGTGTCCGTGATGCCCGTCGCCACCTCGGACCAAGAAGGCGACAGCAGCTTTG
GCAAATACGGCAGAAACGCCTACGTGTAGCAGCTCTGGCCCGTGGGCCCCGCTGTCTTCCCACT
GCCCCAAGGAGAGGGGTCCTGGCCGGGGCCCATTCCCCTATAGTAACCTCAGGGGCCGGCCACG
CCCTGCTCCCGTAGCCCCGCCCCGGTCACGGCCCCGTGTCTTGCACTCCCATGGCCCCTCCAGG
CCAAGAACTGCTCTTGGGAAGTCGCATATCTCCCCCCTGAGGCTGGATCCCTCATCTTCTGACC
CTGGGTTCTGGGCTGTGAAGGGGACGGTGTCCCCGCACGTTTGTATTGTGTATAAATACATTCA
TTAATAAATGTATATTGTGACCGTTCA

hide sequence

RefSeq Acc Id:

XM_034964644 ⟹ XP_034820535

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	7	93,373,452 - 93,380,912 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003807242	(Get FASTA)	NCBI Sequence Viewer
	XP_034820535	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_003807242 ⟸ XM_003807194

- Sequence:

show sequence

MSMAVETFGFFMAAVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVYNCWE
FPSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAG
ICGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWSASLISILGGLCLCSACCCGSDEDPA
ASARRSYQAPVSVMPVATSDQEGDSSFGKYGRNAYV

hide sequence

RefSeq Acc Id:

XP_034820535 ⟸ XM_034964644

RefSeq Acc Id:

ENSPPAP00000025839 ⟸ ENSPPAT00000048669

RefSeq Acc Id:

ENSPPAP00000025834 ⟸ ENSPPAT00000048664

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000036048	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000025834	UniProtKB/TrEMBL
	ENSPPAP00000025839	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000048664	UniProtKB/TrEMBL
	ENSPPAT00000048669	UniProtKB/TrEMBL
InterPro	Claudin	UniProtKB/TrEMBL
	Claudin15	UniProtKB/TrEMBL
	Claudin_CS	UniProtKB/TrEMBL
	PMP22/EMP/MP20/Claudin	UniProtKB/TrEMBL
KEGG Report	pps:100968048	UniProtKB/TrEMBL
NCBI Gene	CLDN15	ENTREZGENE
PANTHER	PTHR12002	UniProtKB/TrEMBL
Pfam	PMP22_Claudin	UniProtKB/TrEMBL
PRINTS	CLAUDIN15	UniProtKB/TrEMBL
PROSITE	CLAUDIN	UniProtKB/TrEMBL
UniProt	A0A2R9B8A6_PANPA	UniProtKB/TrEMBL
	A0A2R9B8B0_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar