NEO1 (neogenin 1) - Rat Genome Database

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Gene: NEO1 (neogenin 1) Pan paniscus
Analyze
Symbol: NEO1
Name: neogenin 1
RGD ID: 11943601
Description: ENCODES a protein that exhibits BMP receptor binding (inferred); cadherin binding (inferred); cell-cell adhesion mediator activity (inferred); INVOLVED IN intracellular iron ion homeostasis (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); myoblast fusion (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog); FOUND IN glutamatergic synapse (ortholog); neuronal cell body (ortholog); postsynaptic density membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neogenin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21662,281,800 - 62,534,799 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11566,446,196 - 66,699,224 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01551,968,238 - 52,221,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11570,680,970 - 70,979,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1570,789,035 - 70,977,178 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NEO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21662,281,800 - 62,534,799 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11566,446,196 - 66,699,224 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01551,968,238 - 52,221,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11570,680,970 - 70,979,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1570,789,035 - 70,977,178 (+)Ensemblpanpan1.1panPan2
NEO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381573,051,692 - 73,305,206 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1573,051,710 - 73,305,205 (+)EnsemblGRCh38hg38GRCh38
GRCh371573,344,804 - 73,597,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361571,131,928 - 71,384,599 (+)NCBINCBI36Build 36hg18NCBI36
Build 341571,131,927 - 71,382,835NCBI
Celera1550,287,439 - 50,476,112 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1550,240,408 - 50,428,957 (+)NCBIHuRef
CHM1_11573,462,785 - 73,715,509 (+)NCBICHM1_1
T2T-CHM13v2.01570,868,937 - 71,122,333 (+)NCBIT2T-CHM13v2.0
Neo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,781,962 - 58,943,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl958,781,970 - 58,943,724 (-)EnsemblGRCm39 Ensembl
GRCm38958,874,679 - 59,036,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,874,687 - 59,036,441 (-)EnsemblGRCm38mm10GRCm38
MGSCv37958,722,486 - 58,884,248 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36958,674,677 - 58,834,445 (-)NCBIMGSCv36mm8
Celera956,103,366 - 56,261,719 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.81NCBI
Neo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8868,169,711 - 68,322,158 (-)NCBIGRCr8
mRatBN7.2859,273,860 - 59,426,486 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl859,275,569 - 59,430,348 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0863,649,871 - 63,756,394 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl863,653,266 - 63,750,531 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0863,417,857 - 63,524,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4862,681,481 - 62,789,841 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1862,702,413 - 62,806,918 (-)NCBI
Celera858,729,882 - 58,837,487 (-)NCBICelera
Cytogenetic Map8q24NCBI
Neo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,191,168 - 4,375,896 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,191,168 - 4,324,997 (-)NCBIChiLan1.0ChiLan1.0
NEO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13036,387,425 - 36,622,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3036,387,259 - 36,622,154 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3036,323,434 - 36,559,824 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03036,594,775 - 36,830,997 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3036,594,757 - 36,830,992 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13036,547,002 - 36,782,998 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03036,572,984 - 36,808,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03036,829,242 - 37,064,354 (+)NCBIUU_Cfam_GSD_1.0
Neo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640114,443,410 - 114,671,197 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647132,292,745 - 32,516,624 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647132,345,578 - 32,517,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl760,064,994 - 60,300,562 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,064,984 - 60,299,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,688,218 - 64,785,685 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NEO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12610,173,707 - 10,427,732 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2610,176,215 - 10,427,675 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048131,173,745 - 131,432,558 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Neo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247811,019,603 - 1,227,666 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247811,021,460 - 1,227,680 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034939096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034939097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034939098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034939099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034939101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008954864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000065344   ⟹   ENSPPAP00000042414
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1570,789,035 - 70,977,178 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065346   ⟹   ENSPPAP00000042416
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1570,789,035 - 70,977,178 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065347   ⟹   ENSPPAP00000042417
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1570,789,035 - 70,977,178 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065350   ⟹   ENSPPAP00000042420
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1570,801,944 - 70,977,178 (+)Ensembl
RefSeq Acc Id: XM_034939096   ⟹   XP_034794987
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,809 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,964 - 66,699,224 (+)NCBI
Mhudiblu_PPA_v01551,968,847 - 52,221,116 (+)NCBI
RefSeq Acc Id: XM_034939097   ⟹   XP_034794988
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,800 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,196 - 66,699,224 (+)NCBI
Mhudiblu_PPA_v01551,968,238 - 52,221,116 (+)NCBI
RefSeq Acc Id: XM_034939098   ⟹   XP_034794989
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,800 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,200 - 66,699,224 (+)NCBI
Mhudiblu_PPA_v01551,968,847 - 52,221,116 (+)NCBI
RefSeq Acc Id: XM_034939099   ⟹   XP_034794990
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,809 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,858 - 66,699,224 (+)NCBI
Mhudiblu_PPA_v01551,968,743 - 52,221,116 (+)NCBI
RefSeq Acc Id: XM_034939101   ⟹   XP_034794992
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,808 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,857 - 66,699,224 (+)NCBI
Mhudiblu_PPA_v01551,968,847 - 52,221,116 (+)NCBI
RefSeq Acc Id: XM_055098915   ⟹   XP_054954890
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,809 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,964 - 66,699,224 (+)NCBI
RefSeq Acc Id: XM_055098916   ⟹   XP_054954891
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,811 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,964 - 66,699,224 (+)NCBI
RefSeq Acc Id: XM_055098917   ⟹   XP_054954892
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,808 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,964 - 66,699,224 (+)NCBI
RefSeq Acc Id: XM_055098918   ⟹   XP_054954893
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,809 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,964 - 66,699,224 (+)NCBI
RefSeq Acc Id: XM_057299928   ⟹   XP_057155911
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,808 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,196 - 66,699,224 (+)NCBI
RefSeq Acc Id: XM_063596775   ⟹   XP_063452845
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,809 - 62,534,799 (+)NCBI
RefSeq Acc Id: XM_063596776   ⟹   XP_063452846
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,808 - 62,534,799 (+)NCBI
RefSeq Acc Id: XM_063596777   ⟹   XP_063452847
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,811 - 62,534,799 (+)NCBI
RefSeq Acc Id: XM_063596778   ⟹   XP_063452848
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,807 - 62,534,799 (+)NCBI
RefSeq Acc Id: XM_063596779   ⟹   XP_063452849
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,800 - 62,534,799 (+)NCBI
RefSeq Acc Id: XM_063596781   ⟹   XP_063452851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,808 - 62,534,799 (+)NCBI
RefSeq Acc Id: XR_008954864
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21662,281,808 - 62,534,799 (+)NCBI
NHGRI_mPanPan11566,446,964 - 66,699,224 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034794988   ⟸   XM_034939097
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CKC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034794990   ⟸   XM_034939099
- Peptide Label: isoform X4
- UniProtKB: A0A2R9CKC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034794987   ⟸   XM_034939096
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CKD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034794992   ⟸   XM_034939101
- Peptide Label: isoform X11
- UniProtKB: A0A2R9CSM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034794989   ⟸   XM_034939098
- Peptide Label: isoform X6
- UniProtKB: A0A2R9CKD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000042414   ⟸   ENSPPAT00000065344
RefSeq Acc Id: ENSPPAP00000042417   ⟸   ENSPPAT00000065347
RefSeq Acc Id: ENSPPAP00000042416   ⟸   ENSPPAT00000065346
RefSeq Acc Id: ENSPPAP00000042420   ⟸   ENSPPAT00000065350
RefSeq Acc Id: XP_054954892   ⟸   XM_055098917
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054954890   ⟸   XM_055098915
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054954891   ⟸   XM_055098916
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054954893   ⟸   XM_055098918
- Peptide Label: isoform X13
RefSeq Acc Id: XP_057155911   ⟸   XM_057299928
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063452849   ⟸   XM_063596779
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063452848   ⟸   XM_063596778
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063452851   ⟸   XM_063596781
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063452846   ⟸   XM_063596776
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063452845   ⟸   XM_063596775
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063452847   ⟸   XM_063596777
- Peptide Label: isoform X6
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043753 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065344.1 UniProtKB/TrEMBL
  ENSPPAT00000065346.1 UniProtKB/TrEMBL
  ENSPPAT00000065347.1 UniProtKB/TrEMBL
  ENSPPAT00000065350.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Neogenin_C UniProtKB/TrEMBL
NCBI Gene NEO1 ENTREZGENE
PANTHER FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
  PTHR44170:SF14 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  Neogenin_C UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A2R9CKB3_PANPA UniProtKB/TrEMBL
  A0A2R9CKC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CKD1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CSM4 ENTREZGENE, UniProtKB/TrEMBL