AFMID (arylformamidase) - Rat Genome Database

Name: AFMID
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: AFMID (arylformamidase) Pan paniscus

Analyze

Symbol:

AFMID

Name:

arylformamidase

RGD ID:

11942604

Description:

INVOLVED IN tryptophan catabolic process to kynurenine (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

kynurenine formamidase

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AFMID (arylformamidase)	NCBI	Ortholog
Mus musculus (house mouse):	Afmid (arylformamidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Afmid (arylformamidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Afmid (arylformamidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Afmid (arylformamidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AFMID (arylformamidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	AFMID (arylformamidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Afmid (arylformamidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	77,831,451 - 77,836,671 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	77,816,908 - 77,835,905 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	72,265,365 - 72,285,764 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

tryptophan catabolic process to kynurenine (ISO)

Cellular Component

cytoplasm (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

kynurenine metabolic pathway (ISO)

tryptophan metabolic pathway (ISO)

References

Genomics

Comparative Map Data

AFMID
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	77,831,451 - 77,836,671 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	77,816,908 - 77,835,905 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	72,265,365 - 72,285,764 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

AFMID
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	78,187,317 - 78,207,701 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	78,185,102 - 78,207,702 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	76,183,398 - 76,203,782 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	73,695,038 - 73,715,377 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	17	72,779,839 - 72,799,987 (+)	NCBI
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	71,607,490 - 71,627,902 (+)	NCBI		HuRef
CHM1_1	17	76,247,936 - 76,268,306 (+)	NCBI		CHM1_1

Afmid
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	117,716,329 - 117,730,734 (+)	NCBI	GRCm39		mm39
GRCm38	11	117,825,503 - 117,839,908 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	117,825,924 - 117,839,908 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	117,687,233 - 117,701,222 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	117,642,014 - 117,655,995 (+)	NCBI			mm8
Celera	11	129,570,944 - 129,584,931 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI

Afmid
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	10	106,828,963 - 106,844,314 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	106,828,981 - 106,844,314 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	106,468,192 - 106,483,539 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	10	101,606,154 - 101,621,688 (+)	NCBI		Celera
Cytogenetic Map	10	q32.2	NCBI

Afmid
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	4,365,926 - 4,379,447 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	4,351,623 - 4,379,528 (-)	NCBI	ChiLan1.0	ChiLan1.0

Afmid
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936594	2,794,927 - 2,805,689 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AFMID
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	3,759,708 - 3,785,836 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	3,759,688 - 3,785,829 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

AFMID
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	70,200,453 - 70,224,190 (+)	NCBI

Afmid
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624801	7,692,928 - 7,715,902 (+)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034942998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034942999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034943000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000030725 ⟹ ENSPPAP00000008090

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	77,816,908 - 77,835,905 (+)	Ensembl

RefSeq Acc Id:

XM_034942998 ⟹ XP_034798889

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	17	72,265,365 - 72,285,764 (+)	NCBI

RefSeq Acc Id:

XM_034942999 ⟹ XP_034798890

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	17	72,265,365 - 72,285,764 (+)	NCBI

RefSeq Acc Id:

XM_034943000 ⟹ XP_034798891

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	17	72,265,365 - 72,285,463 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_034798889	(Get FASTA)	NCBI Sequence Viewer
	XP_034798890	(Get FASTA)	NCBI Sequence Viewer
	XP_034798891	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_034798889 ⟸ XM_034942998
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_034798890 ⟸ XM_034942999
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_034798891 ⟸ XM_034943000
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSPPAP00000008090 ⟸ ENSPPAT00000030725

Protein Domains

Abhydrolase_3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000027280	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000008090	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000030725	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1820	UniProtKB/TrEMBL
InterPro	AB_hydrolase	UniProtKB/TrEMBL
	AB_hydrolase_3	UniProtKB/TrEMBL
	KFase_ver/fungi-typ	UniProtKB/TrEMBL
NCBI Gene	AFMID	ENTREZGENE
Pfam	Abhydrolase_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53474	UniProtKB/TrEMBL
UniProt	A0A2R8ZU52_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - SMPDB