AFMID (arylformamidase) - Rat Genome Database
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Gene: AFMID (arylformamidase) Pan paniscus
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Symbol: AFMID
Name: arylformamidase
RGD ID: 11942604
Description: INVOLVED IN tryptophan catabolic process to kynurenine (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: kynurenine formamidase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11777,831,451 - 77,836,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1777,816,908 - 77,835,905 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01772,265,365 - 72,285,764 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
AFMID
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11777,831,451 - 77,836,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1777,816,908 - 77,835,905 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01772,265,365 - 72,285,764 (+)NCBIMhudiblu_PPA_v0panPan3
AFMID
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1778,187,317 - 78,207,701 (+)EnsemblGRCh38hg38GRCh38
GRCh381778,185,102 - 78,207,702 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371776,183,398 - 76,203,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,695,038 - 73,715,377 (+)NCBINCBI36hg18NCBI36
Celera1772,779,839 - 72,799,987 (+)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1771,607,490 - 71,627,902 (+)NCBIHuRef
CHM1_11776,247,936 - 76,268,306 (+)NCBICHM1_1
Afmid
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,716,329 - 117,730,734 (+)NCBIGRCm39mm39
GRCm3811117,825,503 - 117,839,908 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,825,924 - 117,839,908 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,687,233 - 117,701,222 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611117,642,014 - 117,655,995 (+)NCBImm8
Celera11129,570,944 - 129,584,931 (+)NCBICelera
Cytogenetic Map11E2NCBI
Afmid
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010106,828,963 - 106,844,314 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,828,981 - 106,844,314 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,468,192 - 106,483,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10101,606,154 - 101,621,688 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Afmid
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,365,926 - 4,379,447 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,351,623 - 4,379,528 (-)NCBIChiLan1.0ChiLan1.0
Afmid
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365942,794,927 - 2,805,689 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AFMID
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,759,708 - 3,785,836 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,759,688 - 3,785,829 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AFMID
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,200,453 - 70,224,190 (+)NCBI
Afmid
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248017,692,928 - 7,715,902 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000030725   ⟹   ENSPPAP00000008090
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1777,816,908 - 77,835,905 (+)Ensembl
RefSeq Acc Id: XM_034942998   ⟹   XP_034798889
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01772,265,365 - 72,285,764 (+)NCBI
RefSeq Acc Id: XM_034942999   ⟹   XP_034798890
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01772,265,365 - 72,285,764 (+)NCBI
RefSeq Acc Id: XM_034943000   ⟹   XP_034798891
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01772,265,365 - 72,285,463 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034798889 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798890 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798891 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034798889   ⟸   XM_034942998
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034798890   ⟸   XM_034942999
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034798891   ⟸   XM_034943000
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000008090   ⟸   ENSPPAT00000030725
Protein Domains
Abhydrolase_3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027280 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000008090 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030725 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  AB_hydrolase_3 UniProtKB/TrEMBL
  KFase_ver/fungi-typ UniProtKB/TrEMBL
NCBI Gene AFMID ENTREZGENE
Pfam Abhydrolase_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A2R8ZU52_PANPA UniProtKB/TrEMBL