SEMA4G (semaphorin 4G) - Rat Genome Database

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Gene: SEMA4G (semaphorin 4G) Pan paniscus
Analyze
Symbol: SEMA4G
Name: semaphorin 4G
RGD ID: 11941573
Description: ENCODES a protein that exhibits chemorepellent activity (inferred); semaphorin receptor binding (inferred); INVOLVED IN axon guidance (inferred); cell differentiation (inferred); negative chemotaxis (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: semaphorin-4G
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,854,539 - 112,870,665 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,859,859 - 112,875,985 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01097,570,754 - 97,586,887 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110101,047,079 - 101,063,172 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10101,047,088 - 101,063,172 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SEMA4G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,854,539 - 112,870,665 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,859,859 - 112,875,985 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01097,570,754 - 97,586,887 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110101,047,079 - 101,063,172 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10101,047,088 - 101,063,172 (+)Ensemblpanpan1.1panPan2
SEMA4G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810100,969,504 - 100,985,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10100,969,504 - 100,985,871 (+)EnsemblGRCh38hg38GRCh38
GRCh3710102,729,261 - 102,745,373 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610102,722,276 - 102,735,362 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410102,722,275 - 102,735,362NCBI
Celera1096,470,007 - 96,483,094 (+)NCBICelera
Cytogenetic Map10q24.31NCBI
HuRef1096,361,299 - 96,374,700 (+)NCBIHuRef
CHM1_110103,016,494 - 103,029,583 (+)NCBICHM1_1
T2T-CHM13v2.010101,852,879 - 101,868,991 (+)NCBIT2T-CHM13v2.0
Sema4g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,976,838 - 44,991,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,977,540 - 44,991,836 (+)EnsemblGRCm39 Ensembl
GRCm381944,988,743 - 45,003,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,989,101 - 45,003,397 (+)EnsemblGRCm38mm10GRCm38
MGSCv371945,063,834 - 45,077,885 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361945,042,655 - 45,056,706 (+)NCBIMGSCv36mm8
Celera1945,759,978 - 45,774,039 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.16NCBI
Sema4g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81253,799,552 - 253,814,504 (+)NCBIGRCr8
mRatBN7.21243,849,979 - 243,865,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,853,854 - 243,865,341 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1252,001,505 - 252,013,024 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01258,699,388 - 258,710,907 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01251,351,556 - 251,363,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01264,738,935 - 264,753,399 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1264,741,911 - 264,753,397 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01272,181,343 - 272,195,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41250,057,504 - 250,068,990 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11250,315,156 - 250,329,560 (+)NCBI
Celera1239,665,332 - 239,676,819 (+)NCBICelera
Cytogenetic Map1q54NCBI
Sema4g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554859,201,078 - 9,214,492 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554859,201,078 - 9,211,100 (-)NCBIChiLan1.0ChiLan1.0
SEMA4G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,659,541 - 13,673,807 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,662,686 - 13,672,359 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2813,829,017 - 13,843,309 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02814,127,615 - 14,141,909 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2814,127,665 - 14,141,907 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12813,673,360 - 13,687,654 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02813,714,650 - 13,728,945 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,846,625 - 13,860,915 (+)NCBIUU_Cfam_GSD_1.0
Sema4g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,095,527 - 33,109,139 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366004,700,239 - 4,708,675 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366004,698,752 - 4,712,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA4G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14112,057,002 - 112,068,251 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114112,051,125 - 112,068,253 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214121,660,957 - 121,674,464 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEMA4G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,984,725 - 94,004,253 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl993,988,085 - 94,002,770 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604855,039,673 - 55,055,847 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sema4g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624831577,875 - 589,427 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624831578,087 - 590,458 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000056059   ⟹   ENSPPAP00000033189
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10101,047,088 - 101,063,172 (+)Ensembl
RefSeq Acc Id: XM_008950814   ⟹   XP_008949062
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28112,854,539 - 112,870,665 (+)NCBI
NHGRI_mPanPan110112,859,859 - 112,875,985 (+)NCBI
Mhudiblu_PPA_v01097,570,754 - 97,586,887 (+)NCBI
PanPan1.110101,047,079 - 101,063,172 (+)NCBI
Sequence:
RefSeq Acc Id: XM_057298977   ⟹   XP_057154960
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28112,854,539 - 112,870,665 (+)NCBI
NHGRI_mPanPan110112,859,859 - 112,875,985 (+)NCBI
RefSeq Acc Id: XR_001338560
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28112,854,539 - 112,870,665 (+)NCBI
NHGRI_mPanPan110112,859,859 - 112,875,985 (+)NCBI
Mhudiblu_PPA_v01097,570,754 - 97,586,887 (+)NCBI
PanPan1.110101,047,079 - 101,063,172 (+)NCBI
Sequence:
RefSeq Acc Id: XR_008620018
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28112,854,834 - 112,870,665 (+)NCBI
NHGRI_mPanPan110112,860,154 - 112,875,985 (+)NCBI
RefSeq Acc Id: XR_010113207
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28112,854,834 - 112,870,665 (+)NCBI
RefSeq Acc Id: XR_608298
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28112,854,539 - 112,870,665 (+)NCBI
NHGRI_mPanPan110112,859,859 - 112,875,985 (+)NCBI
Mhudiblu_PPA_v01097,570,754 - 97,586,887 (+)NCBI
PanPan1.110101,047,079 - 101,063,172 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008949062 (Get FASTA)   NCBI Sequence Viewer  
  XP_057154960 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033189.1
Reference Protein Sequences
RefSeq Acc Id: XP_008949062   ⟸   XM_008950814
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C3P0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000033189   ⟸   ENSPPAT00000056059
RefSeq Acc Id: XP_057154960   ⟸   XM_057298977
- Peptide Label: isoform X2
Protein Domains
Ig-like   Sema


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039460 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056059.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ligand-binding face of the semaphorins, domain 2 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Semap_dom UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100971866 UniProtKB/TrEMBL
NCBI Gene SEMA4G ENTREZGENE
PANTHER PTHR11036 UniProtKB/TrEMBL
  SEMAPHORIN-4G UniProtKB/TrEMBL
Pfam PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  SEMA UniProtKB/TrEMBL
SMART PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/TrEMBL
  SSF101912 UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9C3P0 ENTREZGENE, UniProtKB/TrEMBL